Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq39 93.3 4e-14 seq13 93.3 4e-14 >seq39 Length=123869142 Score = 93.3 bits (102), Expect = 4e-14 Identities = 209/307 (68%), Gaps = 9/307 (3%) Strand=Plus/Minus Query 13404 TTTCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATAT 13463 |||| ||| ||| |||| |||| | || | | ||||||||| || || | || | Sbjct 94450175 TTTCTTTAGAATCTTTAATAAAAGTGACAATGAGGAGGCTATACATCTCAGAGTTGATGT 94450116 Query 13464 TTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGT 13523 |||||| | |||||||| ||||| ||||| || ||| | ||||||||| | Sbjct 94450115 TTTCCACGACAATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCTTGGA 94450056 Query 13524 AAAATCTTTCTGCTAAGTTTTCGTTA-ACTATCCCGTCACTAGCAGCaaaaaaaGC--AA 13580 ||| | || | ||||| || || ||||| || ||||| || |||| ||||| || Sbjct 94450055 TAAACCACTCCACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGCCAAA 94449996 Query 13581 GTATGTGCT-TAATAAAttttttttC-GTTTTCTGACAACTTTAACCAATCTGGAAAATC 13638 |||| | | ||| | || | | || | |||| || | | ||||| ||| || Sbjct 94449995 ATATGGGGTATAAAATATCTCTCCTCAGGTTTC-GAGGATTC---CCAATGCTGAATGTC 94449940 Query 13639 TTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCAT 13698 || || | ||| ||||| ||| | |||||||| ||||| |||| |||||||||||| Sbjct 94449939 CTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTG 94449880 Query 13699 CCATATA 13705 ||| ||| Sbjct 94449879 CCAAATA 94449873 >seq13 Length=63241923 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || ||||| || |||| ||| | Sbjct 3818023 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 3818082 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || || ||||| || || ||||| | Sbjct 3818083 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 3818142 Query 13293 C 13293 | Sbjct 3818143 C 3818143 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859 |||||||||| ||| | | || |||| ||| || || | || |||||| | | Sbjct 3799248 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTT-TCTGCCATAACCGCAAAA 3799306 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||| || ||||| ||| ||||| || || ||||| |||||||| ||||| ||| Sbjct 3799307 CGTTGATACTCTGCAACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTT 3799366 Query 12920 TCCATAAAATCGAAAGGATTTT 12941 ||||||||||| || ||||||| Sbjct 3799367 TCCATAAAATCAAAGGGATTTT 3799388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430965234509736