Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq39 93.3 4e-14
seq13 93.3 4e-14
>seq39
Length=123869142
Score = 93.3 bits (102), Expect = 4e-14
Identities = 209/307 (68%), Gaps = 9/307 (3%)
Strand=Plus/Minus
Query 13404 TTTCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATAT 13463
|||| ||| ||| |||| |||| | || | | ||||||||| || || | || |
Sbjct 94450175 TTTCTTTAGAATCTTTAATAAAAGTGACAATGAGGAGGCTATACATCTCAGAGTTGATGT 94450116
Query 13464 TTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGT 13523
|||||| | |||||||| ||||| ||||| || ||| | ||||||||| |
Sbjct 94450115 TTTCCACGACAATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCTTGGA 94450056
Query 13524 AAAATCTTTCTGCTAAGTTTTCGTTA-ACTATCCCGTCACTAGCAGCaaaaaaaGC--AA 13580
||| | || | ||||| || || ||||| || ||||| || |||| ||||| ||
Sbjct 94450055 TAAACCACTCCACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGCCAAA 94449996
Query 13581 GTATGTGCT-TAATAAAttttttttC-GTTTTCTGACAACTTTAACCAATCTGGAAAATC 13638
|||| | | ||| | || | | || | |||| || | | ||||| ||| ||
Sbjct 94449995 ATATGGGGTATAAAATATCTCTCCTCAGGTTTC-GAGGATTC---CCAATGCTGAATGTC 94449940
Query 13639 TTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCAT 13698
|| || | ||| ||||| ||| | |||||||| ||||| |||| ||||||||||||
Sbjct 94449939 CTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTG 94449880
Query 13699 CCATATA 13705
||| |||
Sbjct 94449879 CCAAATA 94449873
>seq13
Length=63241923
Score = 93.3 bits (102), Expect = 4e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || ||||| || |||| ||| |
Sbjct 3818023 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 3818082
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || || || || || || ||||| || || ||||| |
Sbjct 3818083 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 3818142
Query 13293 C 13293
|
Sbjct 3818143 C 3818143
Score = 82.4 bits (90), Expect = 7e-11
Identities = 105/142 (74%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859
|||||||||| ||| | | || |||| ||| || || | || |||||| | |
Sbjct 3799248 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTT-TCTGCCATAACCGCAAAA 3799306
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
|||||| || ||||| ||| ||||| || || ||||| |||||||| ||||| |||
Sbjct 3799307 CGTTGATACTCTGCAACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTT 3799366
Query 12920 TCCATAAAATCGAAAGGATTTT 12941
||||||||||| || |||||||
Sbjct 3799367 TCCATAAAATCAAAGGGATTTT 3799388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430965234509736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |