Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq7 105 5e-18
seq19 102 6e-17
seq39 87.8 1e-12
>seq7
Length=80974532
Score = 105 bits (116), Expect = 5e-18
Identities = 114/150 (76%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565
|| |||||||| ||||| || ||||||||||||||| ||||| || || | |||||||
Sbjct 67495344 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGCCCCATG 67495285
Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625
| | || ||||||||||| ||||| || || ||||| ||| ||| || ||||| ||
Sbjct 67495284 T-CTCCTGACCTCTGGTATAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGGCA 67495226
Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655
| || | ||||||||| || || || ||
Sbjct 67495225 GAGGGCATGGCACGGAGGTAGGGCCATCAG 67495196
Score = 86.0 bits (94), Expect = 4e-12
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 25781 TGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTT 25840
|||| ||||| || |||| ||||||||| || || || | || |||| || || ||||
Sbjct 67492838 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTT 67492779
Query 25841 CCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCT 25900
| | || | || ||| | ||||||||||||| || |||||||| |||||||| |
Sbjct 67492778 CTCGGTTGGCGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTT 67492719
Query 25901 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940
| || ||| | || || || || | ||||||||| ||
Sbjct 67492718 TCACTCCCCTGGAAGACAGTTCCTTAGCGTTTGTGGATCC 67492679
>seq19
Length=53741614
Score = 102 bits (112), Expect = 6e-17
Identities = 133/184 (72%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 25782 GTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTC 25841
||| ||||| || |||| ||||||||| || || || | || |||| || || |||||
Sbjct 21178175 GTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTTC 21178116
Query 25842 CCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTT 25901
| || | || ||| | ||||||||||||| || |||||||| |||||||| ||
Sbjct 21178115 TCGGTTGGCGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTTT 21178056
Query 25902 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 25961
|| ||| | || || || || | ||||||||| || ||| |||||||||| |||
Sbjct 21178055 CACTCCCCTGGAAGACAGTTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTC 21177996
Query 25962 CGCC 25965
| ||
Sbjct 21177995 CTCC 21177992
>seq39
Length=123869142
Score = 87.8 bits (96), Expect = 1e-12
Identities = 126/174 (72%), Gaps = 4/174 (2%)
Strand=Plus/Minus
Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472
||||| | |||||||| || | ||||| |||||| | || || ||||||| ||| |
Sbjct 113736671 AGCTGTATTTTCAGCGGCTCAATGTGATTCAGGTAAATATGCGCATCTCCCAAAGTATAT 113736612
Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAA--AG- 25529
| || || | || | || || || || || |||||||| ||||| || ||
Sbjct 113736611 ATGAAGTCACTTGGCTTCAGGCCTGTCTTGTGTGCAATCATGTAGGTGAGCAGGCGTAGC 113736552
Query 25530 TAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTA 25583
|||||||||||||| ||||| || || | |||||||| | || |||||||||||
Sbjct 113736551 TAGCTGGCGATGTTGAAGGGCACGCCCAGCCCCATGT-CTCCTGACCTCTGGTA 113736499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340124052744564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |