Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq7 105 5e-18 seq19 102 6e-17 seq39 87.8 1e-12 >seq7 Length=80974532 Score = 105 bits (116), Expect = 5e-18 Identities = 114/150 (76%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| || || | ||||||| Sbjct 67495344 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGCCCCATG 67495285 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || ||||||||||| ||||| || || ||||| ||| ||| || ||||| || Sbjct 67495284 T-CTCCTGACCTCTGGTATAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGGCA 67495226 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | ||||||||| || || || || Sbjct 67495225 GAGGGCATGGCACGGAGGTAGGGCCATCAG 67495196 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 25781 TGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTT 25840 |||| ||||| || |||| ||||||||| || || || | || |||| || || |||| Sbjct 67492838 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTT 67492779 Query 25841 CCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCT 25900 | | || | || ||| | ||||||||||||| || |||||||| |||||||| | Sbjct 67492778 CTCGGTTGGCGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTT 67492719 Query 25901 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 | || ||| | || || || || | ||||||||| || Sbjct 67492718 TCACTCCCCTGGAAGACAGTTCCTTAGCGTTTGTGGATCC 67492679 >seq19 Length=53741614 Score = 102 bits (112), Expect = 6e-17 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 25782 GTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTC 25841 ||| ||||| || |||| ||||||||| || || || | || |||| || || ||||| Sbjct 21178175 GTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTTC 21178116 Query 25842 CCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTT 25901 | || | || ||| | ||||||||||||| || |||||||| |||||||| || Sbjct 21178115 TCGGTTGGCGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTTT 21178056 Query 25902 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 25961 || ||| | || || || || | ||||||||| || ||| |||||||||| ||| Sbjct 21178055 CACTCCCCTGGAAGACAGTTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTC 21177996 Query 25962 CGCC 25965 | || Sbjct 21177995 CTCC 21177992 >seq39 Length=123869142 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| | |||||||| || | ||||| |||||| | || || ||||||| ||| | Sbjct 113736671 AGCTGTATTTTCAGCGGCTCAATGTGATTCAGGTAAATATGCGCATCTCCCAAAGTATAT 113736612 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAA--AG- 25529 | || || | || | || || || || || |||||||| ||||| || || Sbjct 113736611 ATGAAGTCACTTGGCTTCAGGCCTGTCTTGTGTGCAATCATGTAGGTGAGCAGGCGTAGC 113736552 Query 25530 TAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTA 25583 |||||||||||||| ||||| || || | |||||||| | || ||||||||||| Sbjct 113736551 TAGCTGGCGATGTTGAAGGGCACGCCCAGCCCCATGT-CTCCTGACCTCTGGTA 113736499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340124052744564