Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 5e-13 seq17 86.0 7e-12 seq39 84.2 2e-11 >seq13 Length=63241923 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| || ||||| | | Sbjct 3799248 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACCGCAAAAC 3799307 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 |||||| || ||||| ||| || || ||||| || || ||||| || || || || Sbjct 3799308 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTTT 3799367 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 3799368 CCATAAAATCAAAGGGATTTTC 3799389 >seq17 Length=64289059 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 21121 ATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCC 21180 ||| | ||| || |||||||| || | || ||| ||| | ||||||| | ||| Sbjct 7112122 ATTCACTTAGAAGTCAGCATCCAAGGTAAACGAATTCTCTGTTGGACTTGACATCACTCC 7112063 Query 21181 CATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240 ||| | ||||| || | ||||| || || || || || ||||| ||||||| ||| || Sbjct 7112062 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 7112003 Query 21241 AGATTCCATAAAATCAAATGGATTTTC 21267 | |||||||| |||||||||||||| Sbjct 7112002 ATTCTCCATAAAGTCAAATGGATTTTC 7111976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | |||||| ||||| || | || ||||| | || | || || Sbjct 7110692 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCTTG 7110633 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| |||||||||||||| | || |||||||| || || || ||||||||||| || Sbjct 7110632 AGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGGCC 7110573 Query 21620 ACTAATCGTTCACC 21633 || | ||||| || Sbjct 7110572 ACAACCCGTTCTCC 7110559 >seq39 Length=123869142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 185/271 (68%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 |||||||| ||||| | || ||||| | | || || ||||| || ||||| || Sbjct 94450137 CTATACATCTCAGAGTTGATGTTTTCCACGACAATTTGGAATCCATAGAAACAGAGGGCT 94450078 Query 21827 TCTGAACATTGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTT-ACTATTCCAT 21884 ||| | ||||| || | ||||| | | ||||||| || ||| ||||| |||| Sbjct 94450077 TCTATAATCTGAACTTCTTGGATAAACCACTCCA-CCAAGTTATCCTTTTACTATGCCAT 94450019 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT 21944 |||| || |||| || ||||| |||| ||||||||||| || | | | | | Sbjct 94450018 CACTTGCCACAAAGAAAGCCAAAATATGGGGTATAAAATATCTCTCCTCAGGTTTCGAGG 94449959 Query 21945 TTTTCCAAT-CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCA 22003 || ||||| || | | || || || | ||| || ||||||| |||||||||| ||| Sbjct 94449958 ATTCCCAATGCTGA-ATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCC 94449900 Query 22004 ATAGCCTTTTTATACATAATCCAGATATCAT 22034 ||| || |||||||| ||| ||| ||| Sbjct 94449899 TCAGCTTTCTTATACATCTGCCAAATACCAT 94449869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531879071852320