Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq13 89.7 5e-13
seq17 86.0 7e-12
seq39 84.2 2e-11
>seq13
Length=63241923
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| ||||| || | ||| ||||||||| ||| || ||||| | |
Sbjct 3799248 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACCGCAAAAC 3799307
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
|||||| || ||||| ||| || || ||||| || || ||||| || || || ||
Sbjct 3799308 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTTT 3799367
Query 21246 CCATAAAATCAAATGGATTTTC 21267
||||||||||||| ||||||||
Sbjct 3799368 CCATAAAATCAAAGGGATTTTC 3799389
>seq17
Length=64289059
Score = 86.0 bits (94), Expect = 7e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 21121 ATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCC 21180
||| | ||| || |||||||| || | || ||| ||| | ||||||| | |||
Sbjct 7112122 ATTCACTTAGAAGTCAGCATCCAAGGTAAACGAATTCTCTGTTGGACTTGACATCACTCC 7112063
Query 21181 CATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240
||| | ||||| || | ||||| || || || || || ||||| ||||||| ||| ||
Sbjct 7112062 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 7112003
Query 21241 AGATTCCATAAAATCAAATGGATTTTC 21267
| |||||||| ||||||||||||||
Sbjct 7112002 ATTCTCCATAAAGTCAAATGGATTTTC 7111976
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559
||||| || || || | |||||| ||||| || | || ||||| | || | || ||
Sbjct 7110692 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCTTG 7110633
Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619
| ||| |||||||||||||| | || |||||||| || || || ||||||||||| ||
Sbjct 7110632 AGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGGCC 7110573
Query 21620 ACTAATCGTTCACC 21633
|| | ||||| ||
Sbjct 7110572 ACAACCCGTTCTCC 7110559
>seq39
Length=123869142
Score = 84.2 bits (92), Expect = 2e-11
Identities = 185/271 (68%), Gaps = 5/271 (2%)
Strand=Plus/Minus
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
|||||||| ||||| | || ||||| | | || || ||||| || ||||| ||
Sbjct 94450137 CTATACATCTCAGAGTTGATGTTTTCCACGACAATTTGGAATCCATAGAAACAGAGGGCT 94450078
Query 21827 TCTGAACATTGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTT-ACTATTCCAT 21884
||| | ||||| || | ||||| | | ||||||| || ||| ||||| ||||
Sbjct 94450077 TCTATAATCTGAACTTCTTGGATAAACCACTCCA-CCAAGTTATCCTTTTACTATGCCAT 94450019
Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT 21944
|||| || |||| || ||||| |||| ||||||||||| || | | | | |
Sbjct 94450018 CACTTGCCACAAAGAAAGCCAAAATATGGGGTATAAAATATCTCTCCTCAGGTTTCGAGG 94449959
Query 21945 TTTTCCAAT-CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCA 22003
|| ||||| || | | || || || | ||| || ||||||| |||||||||| |||
Sbjct 94449958 ATTCCCAATGCTGA-ATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCC 94449900
Query 22004 ATAGCCTTTTTATACATAATCCAGATATCAT 22034
||| || |||||||| ||| ||| |||
Sbjct 94449899 TCAGCTTTCTTATACATCTGCCAAATACCAT 94449869
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531879071852320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |