Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq21 95.1 3e-14 seq19 87.8 5e-12 >seq21 Length=50858623 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || || ||| ||| || ||||||||||||||||| | Sbjct 26616373 GGGGCATTTGCTATTTACCTGGAACCTTGGCATTTAGACATTTTTGAGTTTCTTGATTTA 26616432 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||||||||| || ||| |||||| | || || |||| ||| |||||| || Sbjct 26616433 AAGAAGAACACGGGAAAGGAAGAACAGCGTGCCAGGGACCTTTTCTTTGCTCTTTGGATT 26616492 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 26616493 CCAGATCTGTTCATGAAACGAGTGGAG 26616519 Score = 84.2 bits (92), Expect = 6e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 364118 AGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACA 364177 |||| |||| ||||||||| || || |||| |||||||| || || || ||| | |||| Sbjct 26617900 AGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATGCTCTACA 26617959 Query 364178 AAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACC 364237 ||||||| || || || || |||||||||| || | || || || | ||||||| Sbjct 26617960 AAGATTCCTGTAATCGGAAAAGCAACCAGCAGAACTTGGGAACGATCAAATGCAGCAACC 26618019 Query 364238 TATGTACCGAGATTATTGAATACACC 364263 | || || || || | || || ||| Sbjct 26618020 TGTGCACAGAAATAGTAGAGTATACC 26618045 >seq19 Length=53741614 Score = 87.8 bits (96), Expect = 5e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| || || ||||| || || || ||||||||| || | || || | |||||| Sbjct 21177948 TTTCCTCTGCTGACAACCAAACGTGTATTTTGGAAGGGTGTTTTGGAGGAGTTGCTGTGG 21178007 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| ||| ||||| || || ||||| | | | || ||||| |||||| Sbjct 21178008 TTTATCAAGGGATCCACAAACGCTAAGGAACTGTCTTCCAGGGGAGTGAAAATCTGGGAT 21178067 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAG-TTGGTCTTGTCGACAAC---GAAGAAGG 111490 | ||||| || || |||||| | || ||| ||| | ||| |||| |||||||| Sbjct 21178068 GCCAATGGGTCTCGAGACTTTTTGGA--CAGCCTGGGAT--TCGCCAACCGAGAAGAAGG 21178123 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTAC 111542 ||| | || ||| |||| || ||||| ||| | || ||||| ||||| ||| Sbjct 21178124 GGATTTAGGCCCAATTTATGGCTTTCAGTGGAGGCATTTTGGGGCAGAATAC 21178175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303299026955576