Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 3e-15 seq5 95.1 1e-14 seq39 86.0 6e-12 seq7 84.2 2e-11 >seq4 Length=88276631 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||| |||| || ||||| || || | ||| ||||| || || || ||||| Sbjct 70238975 ATGATGCCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGGATATTGTAG 70238916 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || || || || || |||||||| ||||| || | || | |||||||||||| Sbjct 70238915 TCTGACAGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCA 70238856 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| || || ||||| |||||| |||| | || | || || ||| | Sbjct 70238855 GGCGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCAATGGTGTCACTGGGC 70238796 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| | ||||| || || || || || || || |||||||| Sbjct 70238795 TCGACCTCAAGGGTGATAGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 70238743 >seq5 Length=88915250 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||| || | || | || ||||| || || ||||||||||| Sbjct 39533994 CCACCCCTCAGGCGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 39534053 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||||||||| |||| | | ||||||||| || ||| Sbjct 39534054 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 39534113 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || ||||| || ||| || ||| | | || | || || ||| ||| | Sbjct 39534114 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 39534173 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || |||||||| ||||| ||||| ||| |||| Sbjct 39534174 TCCAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCGGCAT 39534220 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||||| || | || | || ||||| || || ||||||||||| Sbjct 39533536 AGCCACCCCTCAGGCGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAG 39533595 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || |||||||||||||| |||| | | ||||||||| || | Sbjct 39533596 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCG 39533655 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || ||||| || ||| || ||| | | || | || || ||| ||| | Sbjct 39533656 GGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA 39533715 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 39533716 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 39533764 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||| || | || | || ||||| || || ||||||||||| Sbjct 39533766 CCACCCCTCAGGCGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 39533825 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||||||||| |||| | | ||||||||| || ||| Sbjct 39533826 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 39533885 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || ||||| || ||| || ||| | | || | || || ||| ||| | Sbjct 39533886 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 39533945 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 39533946 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 39533992 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||| || || ||||||||||| | ||||| || || |||||||||||| Sbjct 47888004 GTTGACTTTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 47887945 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | | ||||||||| || ||||| || ||||| || ||| || ||| Sbjct 47887944 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 47887885 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || ||| ||| | || | ||| | ||| || ||||| || ||| Sbjct 47887884 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 47887825 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 47887824 TTCACGAAGATCTGCAT 47887808 >seq39 Length=123869142 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||||||||||||||| || || || || ||||| || |||||||| Sbjct 84745765 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCCTCCAGTTGCTTGCCC 84745706 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || | || | | |||||| || |||||||||||||| || || || || ||| Sbjct 84745705 GCAAATATCAGTCTCTGCTGATCAGGAGGGATTCCTTCCTTATCCAGAATCTTGGCCTTT 84745646 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | || | ||||| | || ||| | |||| || | ||| || || || || || Sbjct 84745645 TCATTTTCTATTGTATCCGAGGGCTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTC 84745586 Query 131218 TTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 84745585 TTAACGAAAATCTGCAT 84745569 >seq7 Length=80974532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||| |||| || ||||| || || | ||| ||||| || ||| | ||||| Sbjct 43111203 ATGATGCCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGA-TATTGTAG 43111261 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || || || || || |||||||| ||||| || | || | |||||||||||| Sbjct 43111262 TCTGACAGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCA 43111321 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| || |||||||| |||||| |||| | || || || ||| | Sbjct 43111322 GGTGGGATGCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAGTGGTGTCACTGGGC 43111381 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| | ||||| || | || || || || || | |||||| Sbjct 43111382 TCGACCTCAAGGGTGATAGTTTTGCCCATCAGGGTCTTCACAAAGAGCTGCAT 43111434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471993518277120