Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2863 127 1e-24 seq2843 127 1e-24 seq2727 127 1e-24 seq2351 127 1e-24 seq2323 127 1e-24 seq2075 127 1e-24 seq1550 127 1e-24 seq348 127 1e-24 seq7 127 1e-24 seq39 105 4e-18 seq31 98.7 7e-16 seq26 98.7 7e-16 >seq2863 Length=5341 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 4952 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 5011 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 5012 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 5046 >seq2843 Length=5401 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 390 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 331 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 330 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 296 >seq2727 Length=5747 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 5364 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 5423 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 5424 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 5458 >seq2351 Length=6793 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 6494 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 6553 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 6554 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 6588 >seq2323 Length=6854 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 6424 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 6483 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 6484 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 6518 >seq2075 Length=7607 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 7454 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 7513 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 7514 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 7548 >seq1550 Length=9919 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 9474 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 9533 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 9534 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 9568 >seq348 Length=37117 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 15761 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 15820 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 15821 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 15855 >seq7 Length=80974532 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 80966791 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 80966850 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 80966851 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 80966885 >seq39 Length=123869142 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||| ||||| |||||||||||| ||||| ||||||||| ||| | || Sbjct 84745781 CAACACAAGATGAGGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 84745722 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || |||||||| || | || ||||| | |||| ||||| || || Sbjct 84745721 CTCCAGTTGCTTGCCCGCAAATATCAGTCTCTGCTGATCAGGAGGGATTCCTTCCTTATC 84745662 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || ||| || ||| |||| | | ||||| ||||| || | || || || Sbjct 84745661 CAGAATCTTGGCCTTTTCATTTTCTATTGTATCCGAGGGCTCAACCTCGAGAGTGATGGT 84745602 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | ||| || ||||| |||||||| || Sbjct 84745601 CTTCCCCGTAAGGGTCTTAACGAAAATCTGCATCTT 84745566 >seq31 Length=39895921 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| Sbjct 103854 CTCTCTCTTCAAAGTTCTTTTCAAATTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 103795 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 103794 GCCGGTATTTAGCCTTA 103778 >seq26 Length=38964690 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || ||||| |||| ||||| || ||||| |||||| || || ||||| || || Sbjct 5008495 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 5008436 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | ||||| |||||||| || | | || || || | ||| Sbjct 5008435 CAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 5008376 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| || |||||| || || ||| || |||| || || || | || || Sbjct 5008375 GATGCCCTCCTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCACTGGGCTCCAC 5008316 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || |||||||||||||| |||||||| ||||||||| Sbjct 5008315 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 5008267 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| || |||||| |||||| || || ||||| || |||| || | || || Sbjct 5007792 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007733 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||| |||||||| || | | || || || | ||||| ||| || |||||| Sbjct 5007732 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007673 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || |||| || || || | || || || | || || || ||| Sbjct 5007672 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5007613 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||||||| |||||||| ||||||||| Sbjct 5007612 CCCGTCAAGGTCTTCACGAAGATCTGCATG 5007583 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| || |||||| |||||| || || ||||| || |||| || | || || Sbjct 5008020 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007961 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||| |||||||| || | | || || || | ||||| ||| || |||||| Sbjct 5007960 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007901 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || |||| || || || | || || || | || || || ||| Sbjct 5007900 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5007841 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||||||| |||||||| ||||||||| Sbjct 5007840 CCCGTCAAGGTCTTCACGAAGATCTGCATG 5007811 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| || |||||| |||||| || || ||||| || |||| || | || || Sbjct 5008248 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5008189 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||| |||||||| || | | || || || | ||||| ||| || |||||| Sbjct 5008188 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5008129 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || |||| || || || | || || || | || || || ||| Sbjct 5008128 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5008069 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||||||| |||||||| ||||||||| Sbjct 5008068 CCCGTCAAGGTCTTCACGAAGATCTGCATG 5008039 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| || |||||| |||||| || || ||||| || |||| || | || || Sbjct 5007564 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007505 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||| |||||||| || | | || || || | ||||| ||| || |||||| Sbjct 5007504 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007445 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || |||| || || || | || || || | || || || ||| Sbjct 5007444 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5007385 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||||||| |||||||| |||||||| Sbjct 5007384 CCCGTCAAGGTCTTCACGAAGATCTGCAT 5007356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334933859471708