Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq26 120 3e-22
seq4 120 3e-22
seq1 113 4e-20
seq7 105 6e-18
>seq26
Length=38964690
Score = 120 bits (132), Expect = 3e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|||||||| || || || ||||| ||||| ||||| ||||||| | || |||||| |
Sbjct 5007353 ACAATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCC 5007412
Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||| |||||| | ||| || ||| ||||| || || || || ||||||
Sbjct 5007413 AGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 5007472
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| || | || |||||||||||||| | ||||||| ||||| || ||| |||
Sbjct 5007473 CAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTAC 5007532
Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201
|| || || || || ||||| || ||
Sbjct 5007533 AACATCCAGAAGGAGTCCACTCTGCA 5007558
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| ||||| ||||||| | || |||||| | |
Sbjct 5007584 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5007643
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| ||||| || || || || ||||||||
Sbjct 5007644 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5007703
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || |||||||||||||| | ||||||| ||||| || ||| |||||
Sbjct 5007704 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5007763
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || || ||||| || ||
Sbjct 5007764 ATCCAGAAGGAGTCCACTCTGCA 5007786
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| ||||| ||||||| | || |||||| | |
Sbjct 5007812 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5007871
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| ||||| || || || || ||||||||
Sbjct 5007872 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5007931
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || |||||||||||||| | ||||||| ||||| || ||| |||||
Sbjct 5007932 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5007991
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || || ||||| || ||
Sbjct 5007992 ATCCAGAAGGAGTCCACTCTGCA 5008014
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| ||||| ||||||| | || |||||| | |
Sbjct 5008040 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5008099
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| ||||| || || || || ||||||||
Sbjct 5008100 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5008159
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || |||||||||||||| | ||||||| ||||| || ||| |||||
Sbjct 5008160 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5008219
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || || ||||| || ||
Sbjct 5008220 ATCCAGAAGGAGTCCACTCTGCA 5008242
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| ||||| ||||||| | || |||||| | |
Sbjct 5008268 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5008327
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| ||||| || || || || ||||||||
Sbjct 5008328 GACACCATCGAGAACGTTAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5008387
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || |||||||||||||| | ||||||| ||||| || ||| |||||
Sbjct 5008388 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5008447
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 5008448 ATCCAGAAGGAGTCTACTCTGCACTTGGTCCT 5008479
>seq4
Length=88276631
Score = 120 bits (132), Expect = 3e-22
Identities = 155/213 (73%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| ||||| ||||| ||||||| | || |||||| |
Sbjct 13711230 AATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTGGAGCCCAG 13711289
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||| |||||| | || || ||| || ||||| || || || ||||||||
Sbjct 13711290 TGACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCC-CCTGACCA 13711348
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || |||||||||||||| | ||||||| ||||| || ||| |||||
Sbjct 13711349 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGCCCGACTACAA 13711408
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || |||||||| || || || || ||
Sbjct 13711409 CATCCAGAAGGAATCCACTCTGCACTTGGTCCT 13711441
>seq1
Length=122678785
Score = 113 bits (124), Expect = 4e-20
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| ||||| ||||||| | || |||||| | |
Sbjct 14875397 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 14875338
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | || || ||| || ||||| || || || ||||||||
Sbjct 14875337 GACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCTGACCAG 14875278
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || |||||||||||||| ||||||||| |||| || ||| |||||
Sbjct 14875277 CAGAGGTTGATCTTTGCCGGCAAACAGCTAGAAGATGGGTGCACCCTGTCCGACTACAAC 14875218
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAA 25218
|| || || || ||||| || || || || || ||| ||
Sbjct 14875217 ATCCAGAAGGAGTCCACTCTGCACTTGGTCCTGCGGCCAA 14875178
>seq7
Length=80974532
Score = 105 bits (116), Expect = 6e-18
Identities = 155/216 (72%), Gaps = 9/216 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| | ||||| ||||| ||| || ||| | ||||| | || || ||| | |
Sbjct 43111434 ATGCAGCTCTTTGTGAAGACCCTGATGGGCAAAACTATCACCCTTGAGGTCGAGCCCAGT 43111375
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| | || |||| |||| |||| || |||||||| || || ||||||||
Sbjct 43111374 GACACCACTGAAAATGTCA---AAGCCAAAATCCAA-GACAAAGAGGGCATCCCACCTGA 43111319
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||||| | |||||||| |||||||| ||||||||| || ||| || || ||
Sbjct 43111318 CCAGCAGCGTCTGATTTTTGCGGGCAAACAGCTAGAAGATGGCCGAACTCTGTCAGACTA 43111259
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| ||| ||||| ||||| | || || |||||
Sbjct 43111258 CAATA-TCAGAAAGAGTCCACCTTGCACTTGGTGCT 43111224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433310741087420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |