Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq39 145 8e-30 seq17 96.9 4e-15 >seq39 Length=123869142 Score = 145 bits (160), Expect = 8e-30 Identities = 290/423 (69%), Gaps = 5/423 (1%) Strand=Plus/Minus Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 ||||| | || | || ||| ||||| ||||| ||||||| | ||| || || || || Sbjct 94450248 ATCCAATGCAAGGTCCGATCTGCTTTCTTCTTTATACAAGACATTGTCTCAATGGCATTG 94450189 Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 || || | || | || | |||||| || | || | || | || |||||| Sbjct 94450188 AAGAGAAATTCCCTTTCTTTAGAATCTTTAATAAAAGTGACAATGAGGAGGCTATACATC 94450129 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 ||||| | || || |||| ||||||||||||| |||||||| ||||| | ||| Sbjct 94450128 TCAGAGTTGATGTTTTCCACGACAATTTGGAATCCATAGAAACAGAGGGCTTCTATAATC 94450069 Query 93452 TGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 || |||||||| ||| | ||| | | || | | | || ||||| ||||| ||| | Sbjct 94450068 TGAACTTCTTGGATAAACCACTCCACCAAGTTATCCTTTTACTATGCCATCACTTGCCAC 94450009 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT-AAGCTTATCCCAAT 93569 ||| |||||||| ||||| |||||||| | |||| ||| ||| || | ||||||| Sbjct 94450008 AAAGAAAGCCAAAATATGGGGTATAAAATATCTCTCCTCAGGTTTCGAGGAT-TCCCAAT 94449950 Query 93570 -CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 | || | || || |||||||| || ||||| | |||||||| || || || ||||| Sbjct 94449949 GCTGA-ATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTC 94449891 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTA 93688 || ||||| | ||| || | || || | || | | ||||||| || |||||| Sbjct 94449890 TTATACATCTGCCAAATACCATGGTACTCGATAAGGAGAATGACAACGTGACAAGGGTTT 94449831 Query 93689 TCT 93691 ||| Sbjct 94449830 TCT 94449828 >seq17 Length=64289059 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || || | || || | ||| || |||||||||||||| |||||||| ||| Sbjct 7110674 TCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCTTGAGCCAGAATATTGACGCA 7110615 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||| ||||| || || ||||||||||| ||||| ||||||| ||||| Sbjct 7110614 AAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGGCCACAACCCGTTC 7110562 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| || || || || || | ||| |||||| ||||| |||| || ||||| Sbjct 7108471 GAATCTTTAATATAAGTGTCAATGAGGAGACTATACATCTCAGAGTGGATGTTTTCCATG 7108412 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | |||||||| ||||| |||||||| Sbjct 7108411 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCCGTAATCTGAACTTCTTG 7108362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556838052236320