Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq4 129 5e-25
seq1 104 2e-17
seq26 100 2e-16
seq39 96.9 3e-15
seq5 86.0 5e-12
>seq4
Length=88276631
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| || || | || || ||||| |||| ||||| || || |||
Sbjct 70238741 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAAACTATCACCCTTGAGGTCGAGCCCA 70238800
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| ||| | || || ||||| ||||| |||||||||||||| || || || || |
Sbjct 70238801 GTGACACCATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACC 70238860
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || ||||| || ||||| ||||||||| |||| ||| ||| || | || || ||||
Sbjct 70238861 AGCAGCGTCTGATTTTTGCGGGCAAACAGCTAGAAGATGGCCGAACTCTGTCAGACTACA 70238920
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
| || || ||||| |||||| | || || || | || |||| || ||
Sbjct 70238921 ATATCCAGAAAGAGTCCACCTTGCACTTGGTGCTTCGCCTGCGAGGTGG 70238969
Score = 120 bits (132), Expect = 3e-22
Identities = 164/228 (72%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || || || ||||| || ||||||| || ||||| |||
Sbjct 13711231 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTGGAGCCCAGT 13711290
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || ||||| || || ||||| || ||||| || || || || ||
Sbjct 13711291 GACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCC-CCTGACCAG 13711349
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||||||||||||| | || ||| |||||| | |||| ||||||
Sbjct 13711350 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGCCCGACTACAAC 13711409
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || |||||||| | || || || |||| ||| | ||||||
Sbjct 13711410 ATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGGT 13711457
>seq1
Length=122678785
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || ||||| || |||| || || ||||| |||
Sbjct 14875397 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 14875338
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || ||||| || || ||||| || ||||| || || || || ||
Sbjct 14875337 GACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCTGACCAG 14875278
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||||||||||||| |||| ||| ||||| | ||||| ||||||
Sbjct 14875277 CAGAGGTTGATCTTTGCCGGCAAACAGCTAGAAGATGGGTGCACCCTGTCCGACTACAAC 14875218
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
|| || || || ||||| | || || || ||||
Sbjct 14875217 ATCCAGAAGGAGTCCACTCTGCACTTGGTCCTGCG 14875183
>seq26
Length=38964690
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || ||||| || |||| || || ||||| |||
Sbjct 5008268 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5008327
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | || || || || ||||||||||| || || || || ||
Sbjct 5008328 GACACCATCGAGAACGTTAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5008387
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||||||||||||| | || ||| |||||| | ||||| ||||||
Sbjct 5008388 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5008447
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || || || | || || || |||| ||| | ||||||
Sbjct 5008448 ATCCAGAAGGAGTCTACTCTGCACTTGGTCCTGCGCTTGAGGGGAGGT 5008495
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || ||||| || |||| || || ||||| |||
Sbjct 5007356 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5007415
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || || ||||||||||| || || || || ||
Sbjct 5007416 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5007475
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||||||||||||| | || ||| |||||| | ||||| ||||||
Sbjct 5007476 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5007535
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || |||||
Sbjct 5007536 ATCCAGAAGGAGTCCAC 5007552
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || ||||| || |||| || || ||||| |||
Sbjct 5007584 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5007643
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || || ||||||||||| || || || || ||
Sbjct 5007644 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5007703
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||||||||||||| | || ||| |||||| | ||||| ||||||
Sbjct 5007704 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5007763
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || |||||
Sbjct 5007764 ATCCAGAAGGAGTCCAC 5007780
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || ||||| || |||| || || ||||| |||
Sbjct 5007812 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5007871
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || || ||||||||||| || || || || ||
Sbjct 5007872 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5007931
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||||||||||||| | || ||| |||||| | ||||| ||||||
Sbjct 5007932 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5007991
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || |||||
Sbjct 5007992 ATCCAGAAGGAGTCCAC 5008008
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || ||||| || |||| || || ||||| |||
Sbjct 5008040 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5008099
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || || ||||||||||| || || || || ||
Sbjct 5008100 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5008159
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||||||||||||| | || ||| |||||| | ||||| ||||||
Sbjct 5008160 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5008219
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || |||||
Sbjct 5008220 ATCCAGAAGGAGTCCAC 5008236
>seq39
Length=123869142
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| ||||| ||||| || | || || || || ||||||| || || || ||
Sbjct 84745566 AAGATGCAGATTTTCGTTAAGACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAGCCC 84745625
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || || || || |||| || ||||| || || || || |||
Sbjct 84745626 TCGGATACAATAGAAAATGAAAAGGCCAAGATTCTGGATAAGGAAGGAATCCCTCCTGAT 84745685
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || | || |||||||| ||||| || | |||||| ||| || | || || |||
Sbjct 84745686 CAGCAGAGACTGATATTTGCGGGCAAGCAACTGGAGGATGGCCGTACTTTGTCTGACTAC 84745745
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||||||||| || ||||| ||| | || ||| || | || || |||
Sbjct 84745746 AACATTCAAAAGGAGTCCACTCCTCATCTTGTGTTGAGACTTCGTGGTGGT 84745796
>seq5
Length=88915250
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||| || || || ||||| ||||||| || || |||| || || ||||| |||
Sbjct 39534220 ATGCCGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 39534161
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || | || || || || || || ||||| || || || || ||
Sbjct 39534160 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCGCCTGACCAG 39534101
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || ||||| ||||| ||| | || ||| |||||| | || |||||||||
Sbjct 39534100 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 39534041
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || ||||| || ||
Sbjct 39534040 ATCCAGAAAGAGTCAAC 39534024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419711282758420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |