Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4 129 5e-25 seq1 104 2e-17 seq26 100 2e-16 seq39 96.9 3e-15 seq5 86.0 5e-12 >seq4 Length=88276631 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || ||||| |||| ||||| || || ||| Sbjct 70238741 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAAACTATCACCCTTGAGGTCGAGCCCA 70238800 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||| |||||||||||||| || || || || | Sbjct 70238801 GTGACACCATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACC 70238860 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || ||||| ||||||||| |||| ||| ||| || | || || |||| Sbjct 70238861 AGCAGCGTCTGATTTTTGCGGGCAAACAGCTAGAAGATGGCCGAACTCTGTCAGACTACA 70238920 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | || || ||||| |||||| | || || || | || |||| || || Sbjct 70238921 ATATCCAGAAAGAGTCCACCTTGCACTTGGTGCTTCGCCTGCGAGGTGG 70238969 Score = 120 bits (132), Expect = 3e-22 Identities = 164/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || ||||| || ||||||| || ||||| ||| Sbjct 13711231 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTGGAGCCCAGT 13711290 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || ||||| || ||||| || || || || || Sbjct 13711291 GACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCC-CCTGACCAG 13711349 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | |||| |||||| Sbjct 13711350 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGCCCGACTACAAC 13711409 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || |||||||| | || || || |||| ||| | |||||| Sbjct 13711410 ATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGGT 13711457 >seq1 Length=122678785 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 14875397 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 14875338 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || ||||| || ||||| || || || || || Sbjct 14875337 GACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCTGACCAG 14875278 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| |||| ||| ||||| | ||||| |||||| Sbjct 14875277 CAGAGGTTGATCTTTGCCGGCAAACAGCTAGAAGATGGGTGCACCCTGTCCGACTACAAC 14875218 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || ||||| | || || || |||| Sbjct 14875217 ATCCAGAAGGAGTCCACTCTGCACTTGGTCCTGCG 14875183 >seq26 Length=38964690 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 5008268 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5008327 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| || || || || || Sbjct 5008328 GACACCATCGAGAACGTTAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5008387 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | ||||| |||||| Sbjct 5008388 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5008447 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || || |||| ||| | |||||| Sbjct 5008448 ATCCAGAAGGAGTCTACTCTGCACTTGGTCCTGCGCTTGAGGGGAGGT 5008495 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 5007356 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5007415 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 5007416 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5007475 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | ||||| |||||| Sbjct 5007476 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5007535 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 5007536 ATCCAGAAGGAGTCCAC 5007552 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 5007584 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5007643 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 5007644 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5007703 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | ||||| |||||| Sbjct 5007704 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5007763 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 5007764 ATCCAGAAGGAGTCCAC 5007780 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 5007812 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5007871 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 5007872 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5007931 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | ||||| |||||| Sbjct 5007932 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5007991 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 5007992 ATCCAGAAGGAGTCCAC 5008008 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 5008040 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5008099 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 5008100 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5008159 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | ||||| |||||| Sbjct 5008160 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5008219 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 5008220 ATCCAGAAGGAGTCCAC 5008236 >seq39 Length=123869142 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| ||||| || | || || || || ||||||| || || || || Sbjct 84745566 AAGATGCAGATTTTCGTTAAGACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAGCCC 84745625 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || || || |||| || ||||| || || || || ||| Sbjct 84745626 TCGGATACAATAGAAAATGAAAAGGCCAAGATTCTGGATAAGGAAGGAATCCCTCCTGAT 84745685 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || |||||||| ||||| || | |||||| ||| || | || || ||| Sbjct 84745686 CAGCAGAGACTGATATTTGCGGGCAAGCAACTGGAGGATGGCCGTACTTTGTCTGACTAC 84745745 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||||| ||| | || ||| || | || || ||| Sbjct 84745746 AACATTCAAAAGGAGTCCACTCCTCATCTTGTGTTGAGACTTCGTGGTGGT 84745796 >seq5 Length=88915250 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||| || || || ||||| ||||||| || || |||| || || ||||| ||| Sbjct 39534220 ATGCCGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 39534161 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || || ||||| || || || || || Sbjct 39534160 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCGCCTGACCAG 39534101 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 39534100 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 39534041 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| || || Sbjct 39534040 ATCCAGAAAGAGTCAAC 39534024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419711282758420