Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq38 95.1 2e-14 seq17 89.7 1e-12 seq11 89.7 1e-12 seq6 89.7 1e-12 >seq38 Length=23914537 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 22823226 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 22823285 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 22823286 TCCCGGCAGAGA 22823297 >seq17 Length=64289059 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 58825639 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 58825698 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 58825699 CCCACGTTGGGC 58825710 >seq11 Length=74389097 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 405030 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 405089 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 405090 CCCACGTTGGGC 405101 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 414405 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 414346 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 414345 CCCACGTTGGGC 414334 >seq6 Length=77573801 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 38021449 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 38021390 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 38021389 CCCACGTTGGGC 38021378 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 38030161 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 38030102 Query 142564 CCCACATCGGGC 142575 |||| | |||| Sbjct 38030101 CCCATGTTGGGC 38030090 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| || |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 38045401 GCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 38045342 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 38045341 CCCACGTTGGGC 38045330 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 38052840 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGT 38052899 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 38052900 CCCACGTTGGGC 38052911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027793763188388