Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq19 98.7 9e-16 seq7 93.3 4e-14 >seq19 Length=53741614 Score = 98.7 bits (108), Expect = 9e-16 Identities = 236/355 (66%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 20534 GCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGC 20593 |||||||| ||||||||||| || || |||| || || |||||||| || || || Sbjct 21178168 GCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTTCTCGGTTG 21178109 Query 20594 GCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCT 20653 || | || | | | ||| || || | || ||||| ||||| || || ||||| Sbjct 21178108 GCGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTTTCACTCCC 21178049 Query 20654 GTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACT 20713 | || || ||| | | || || ||||| | |||||| |||| ||| | || Sbjct 21178048 CTGGAAGACAGTTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAA 21177989 Query 20714 ACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTATAC 20773 || || |||||| || || || || || || | ||||| | || | ||| || || Sbjct 21177988 ACACCCTTCCAAAATACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAG 21177929 Query 20774 CTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTCGAGTCGATCGCTG 20833 | ||||||||||| || | || || ||||| |||| |||||||| || || | Sbjct 21177928 CGCGCCTGCATGCCGAACACCGACAGCGTGCCCGTGCCCGTGCGGTC--GTGCTTCCGGG 21177871 Query 20834 CCACG--GCACAAAATTTCCCTCAACTGCCTGAGATACTGAAGTTCCTCGTGGGG 20886 || || || || || | | || ||||| || ||||| || ||| ||||||| Sbjct 21177870 CCCCGCAGCTCAGGATGTGCTCCACCTGCCCCAGGTACTGCAGCTCCCCGTGGGG 21177816 >seq7 Length=80974532 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||| ||||| || || || |||| ||| Sbjct 67495347 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGCCCC 67495288 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 |||||||| |||||||| || ||||| ||||| |||||||||| | ||||| || || Sbjct 67495287 ATGTCTCCTGACCTCTGGTATAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGG 67495228 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | || || || || || ||||||| Sbjct 67495227 CAGAGGGCATGGCACGGAGGTAGGGCCATCA 67495197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441354769921120