Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq7 109 6e-19 seq35 93.3 5e-14 seq5 93.3 5e-14 seq38 91.5 2e-13 seq26 91.5 2e-13 seq15 89.7 6e-13 >seq4 Length=88276631 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| ||||| ||| ||| || || |||||||| || | |||||| || | || || Sbjct 70238952 CACCAAGTGCAAGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTTCGGCCATCTTC 70238893 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||| || || || || || || ||||||||||| | || | || ||||||||| Sbjct 70238892 TAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 70238833 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| ||||| | | | ||||| || | || || || | ||||| ||||| Sbjct 70238832 GATTTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATAGTTTT 70238773 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || ||||| |||||||| ||||| Sbjct 70238772 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 70238743 >seq7 Length=80974532 Score = 109 bits (120), Expect = 6e-19 Identities = 151/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| ||||| ||| ||| || ||| ||||||| || | |||||| || | || || Sbjct 43111226 CACCAAGTGCAAGGTGGACTCTTTCTGA-TATTGTAGTCTGACAGAGTTCGGCCATCTTC 43111284 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||| || || || || || || ||||||||||| | ||| | || ||| ||||| Sbjct 43111285 TAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCTTTGTCTTG 43111344 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| ||||| | | ||||| || | || || || | ||||| ||||| Sbjct 43111345 GATTTTGGCTTTGACATTTTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGATAGTTTT 43111404 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| | || ||||| ||||||| ||||| Sbjct 43111405 GCCCATCAGGGTCTTCACAAAGAGCTGCAT 43111434 >seq35 Length=26524999 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 24874678 TTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 24874737 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 24874738 ACTATACTAACGAGGA 24874753 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 24816899 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 24816840 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 24816839 TACTAACGAGGA 24816828 >seq5 Length=88915250 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 33028675 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 33028734 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 33028735 TATACTAACGAGGA 33028748 >seq38 Length=23914537 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 21070639 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 21070698 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 21070699 ATACTAACGAGGA 21070711 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 21090963 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 21091022 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 21091023 TACTAACGAGGA 21091034 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 21094844 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 21094785 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 21094784 TACTAACGAGGA 21094773 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 21109717 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 21109658 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 21109657 TACTAACGAGGA 21109646 >seq26 Length=38964690 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4996565 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4996506 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 4996505 TACTAACGAGGAT 4996493 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4998844 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4998785 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 4998784 TACTAACGAGGACTG 4998770 >seq15 Length=64190966 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 35831173 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 35831114 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 35831113 TACTAACGAGGA 35831102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543190609757120