Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5 122 9e-23 seq4 120 3e-22 seq1 113 5e-20 seq39 102 8e-17 seq21 95.1 1e-14 seq6 91.5 1e-13 seq7 84.2 2e-11 >seq5 Length=88915250 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 39533568 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 39533627 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || ||||| || || || || ||| Sbjct 39533628 GCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 39533687 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 39533688 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 39533747 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 39533748 TTCACGAAGATCTGCAT 39533764 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 39533796 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 39533855 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || ||||| || || || || ||| Sbjct 39533856 GCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 39533915 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 39533916 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 39533975 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 39533976 TTCACGAAGATCTGCAT 39533992 Score = 122 bits (134), Expect = 9e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || | ||| || ||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 47888004 GTTGACTTTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 47887945 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || ||||| || || || || ||| Sbjct 47887944 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 47887885 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || |||| || ||||| || | || | |||||||||||||| ||| Sbjct 47887884 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 47887825 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 47887824 TTCACGAAGATCTGCATTTT 47887805 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 39534024 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 39534083 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || ||||| || || || || ||| Sbjct 39534084 GCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 39534143 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||| | ||| Sbjct 39534144 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTTAGGGTT 39534203 Query 64427 TTTACGAAAATTTGCATTT 64445 || ||||| || |||||| Sbjct 39534204 TTCACGAAGATCGGCATTT 39534222 >seq4 Length=88276631 Score = 120 bits (132), Expect = 3e-22 Identities = 146/198 (74%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||||||| | ||||| ||||| |||||| Sbjct 13711426 GTGGATTCCTTCTGGATGTTGTAGTCGGGCAGGGTGCGCCCATCTTCCAGCTGTTTGCCG 13711367 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||||||| || ||| | || ||||||||||| || || || Sbjct 13711366 GCAAAGATCAACCTCTGCTGGTCAGGGGGA-TGCCCTCTTTTTCTTGGATCTTCCCTTTG 13711308 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | ||| | |||||| || ||||| || Sbjct 13711307 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTACCAGTCAAGGTC 13711248 Query 64427 TTTACGAAAATTTGCATT 64444 || || || || |||||| Sbjct 13711247 TTCACAAAGATCTGCATT 13711230 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| | || | || || ||||| || || ||||| |||| Sbjct 70238969 CCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGGATATTGTAGTCTGAC 70238910 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| ||||| ||||| ||| |||| || ||||||||||| || || Sbjct 70238909 AGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGG 70238850 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| | |||| ||||| ||| || | || |||| || || || Sbjct 70238849 ATGCCCTCCTTGTCTTGGA-TTTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGAC 70238791 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || ||||| |||| || || || || || ||||| Sbjct 70238790 CTCAAGGGTGATAGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 70238743 >seq1 Length=122678785 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||| | | ||||| ||||| |||||| Sbjct 14875201 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCACCCATCTTCTAGCTGTTTGCCG 14875260 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||||||| || || || || ||||||||||| || || || Sbjct 14875261 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCTTGGATCTTCCCTTTG 14875320 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||| || ||||| || Sbjct 14875321 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTC 14875380 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 14875381 TTCACGAAGATCTGCAT 14875397 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 ||||| || ||||||||||| | | | |||| | ||||| |||| |||||| ||| | Sbjct 93617936 TCTTTCTGGATGTTGTAATCAGAAAGGATGCGGCCATCTTCCAGCTTCTTGCCTGCAAAG 93617995 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||||| ||||||||| ||||| || ||| |||| ||||| || || ||| ||| Sbjct 93617996 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTCCTTTATCTTGGATCTTGGCCTTCACATTT 93618055 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || || |||| || || || || | | | ||| |||| || || || || | | Sbjct 93618056 TCGTTGGTGTCACTGGGCTCAACCTCCAGGATGATGGTATTGCAGGCCAGGGTCTTCATG 93618115 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 93618116 AATATCTGCAT 93618126 >seq39 Length=123869142 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| |||||| || || || |||||||||||||| || | Sbjct 84745796 ACCACCACGAAGTCTCAACACAAGATGAGGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 84745737 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || || |||||||| ||| | || || | |||||| || ||||| Sbjct 84745736 CAAAGTACGGCCATCCTCCAGTTGCTTGCCCGCAAATATCAGTCTCTGCTGATCAGGAGG 84745677 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||| || || | || || |||| || || | |||||| || || || Sbjct 84745676 GATTCCTTCCTTATCCAGAATCTTGGCCTTTTCATTTTCTATTGTATCCGAGGGCTCAAC 84745617 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || || | || || |||||||| ||||| || Sbjct 84745616 CTCGAGAGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAAATCTGCATCTT 84745566 >seq21 Length=50858623 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||| ||| | | ||| | | ||||| ||||||||||| Sbjct 29349535 GTTGACTCTTTCTGGATGTTGTCATCAGAAAGAGTGTGGCCATCTTCCAGCTGCTTGCCT 29349476 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || ||||| || || || || ||| Sbjct 29349475 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 29349416 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | | | | |||||| ||||| || Sbjct 29349415 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGATGATGATCTTGCTGGTCAGGGTC 29349356 Query 64427 TTTACGAAAATTTGCAT 64443 || | ||| || ||||| Sbjct 29349355 TTCATGAAGATCTGCAT 29349339 >seq6 Length=77573801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | | |||| | ||||| |||||||| || Sbjct 46134199 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTACCT 46134258 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||||| ||||||||| || || | || ||||| || || || || ||| Sbjct 46134259 GCAACGATGAGCCTCTGCTGGTCAGG-GGGGTGCCCTCTTTATCCTGGATCTTGGCCTTC 46134317 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||| ||||| || Sbjct 46134318 ACATTTTCAATAGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCAGGTCAGGGTC 46134377 Query 64427 TTTACGAAAATTTGCAT 64443 || | ||| || ||||| Sbjct 46134378 TTCAGGAAGATCTGCAT 46134394 >seq7 Length=80974532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| | || | || || ||||| ||| | ||||| |||| Sbjct 43111209 CCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGA-TATTGTAGTCTGAC 43111267 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| ||||| ||||| ||| |||| || ||||||||||| || || Sbjct 43111268 AGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG 43111327 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || || ||||| ||||| ||||| Sbjct 43111328 ATGCCCTCTTTGTCTTGGATTTT 43111350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499624389509920