Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq7 163 4e-35
seq9 104 3e-17
>seq7
Length=80974532
Score = 163 bits (180), Expect = 4e-35
Identities = 207/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950
|| ||||| |||||||| || || ||||| ||||| || | || || || | |||
Sbjct 19669833 AATGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATTGAGGCAGTGTTGATGATT 19669892
Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010
| || ||||| || || || |||||||| || |||||||| | || || ||||||
Sbjct 19669893 TTAAAGCCTACTTCTCCACCAAAGGTGCTAGGCTTCCAGTAGTCAGGTGAACAGATGGGA 19669952
Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070
|| |||| || ||||||||||| || || || |||| || | ||| ||||||| |||
Sbjct 19669953 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATTTCTACCATGGTCTCACCAAAG 19670012
Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130
|||||| | ||||| || ||||| || | || | ||| || || || | || || |
Sbjct 19670013 ATGGCATCTGGACGAGGCTTTTCTACCAAGAGGGCAGGATACAGCTCCATGGCATCAATA 19670072
Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| ||||| ||||| |||||| | ||||| || |||||||| |||
Sbjct 19670073 TCACCATAAAGGGCCTCCAACCCCGCAGCCATTTCCTTCTCTCCT 19670117
Score = 152 bits (168), Expect = 7e-32
Identities = 171/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || || ||| |||| ||| ||||||| ||||| || ||||| || ||||| || ||
Sbjct 19671354 GTCTGGAATAACCGCTCATCATCCCATTCTGGGTGCTCCTGTTTAAGCACATCACACACT 19671413
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||| || || | |||||| |||||||| |||||||| | ||| ||||| | ||||||
Sbjct 19671414 CTGTTATGCTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 19671473
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
|| || | ||||| ||||| |||| | || || || | || | || | ||| |
Sbjct 19671474 ACCTCCTGGCCCACAGCAAACTGCAGGTGTTCAGGAACATGAGGTGGGTAGATCATCTCG 19671533
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967
||||| || ||||||||||| || ||||||| || || ||||| ||||
Sbjct 19671534 ACCTGAGTATCTTTGACGGTAGGAGGATACACCTCTCCATCAATTACCT 19671582
Score = 138 bits (152), Expect = 2e-27
Identities = 139/178 (78%), Gaps = 2/178 (1%)
Strand=Plus/Plus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| ||||||||| | |||||||| ||||||||| ||| ||| | ||
Sbjct 19672338 TCTTACCCCATGGCCCAATCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 19672397
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
|||||| || |||||||| || | || || || ||||||| |||||||| ||||||||
Sbjct 19672398 AAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTGGTGCCTTGGGGATC 19672457
Query 10241 GGGGATAAAGGTCCTCCGAATAA-AAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
|| || || | || || | || ||||||| |||||||||| | ||||||| || ||
Sbjct 19672458 AGGAATGAACTTTCTTCGCAGAAGAAACTTT-TCCACAATCTCTTTTGAATCAGGAAG 19672514
Score = 105 bits (116), Expect = 1e-17
Identities = 196/286 (69%), Gaps = 4/286 (1%)
Strand=Plus/Plus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
|| ||||| || || |||| ||||| || || |||| | || || | | | ||
Sbjct 19670766 CCAGCAATTTGCCTGCTGAATGATTCCACAAACTGGGTAAGGCCATGTTCCAATAATATA 19670825
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555
|| |||||||| | || |||| | || |||| | ||| |||| | || |||
Sbjct 19670826 GAGTTGTTGTAGATAAACTGTTGGAAATTGTACTCCTGGTCATCTATTTGCAAGGTGTCA 19670885
Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615
|||| || | ||||||| ||||||| || || ||||| || || || ||||| ||||||
Sbjct 19670886 GGCAGGAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATGCGGTTTTGGTAC 19670945
Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673
|| || | ||| ||| || | ||| |||||||| | |||| |||||| || || |
Sbjct 19670946 TGGAATTGTTGGTT--GAAAAGCAGCTCTGGGTCAAACTTCAGCTTGAAGTGATAGCCAC 19671003
Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| | || || ||||| | | || | ||| ||||||||||| ||
Sbjct 19671004 TCAAGTGTTGTACATAGTCTTCAATCACAATCTTAATGGTTTCTCC 19671049
Score = 95.1 bits (104), Expect = 2e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | || || || |||||| ||| || || || |||| ||| |||
Sbjct 19672936 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGGTACAGGGGGAAGAGCTCTGGTA 19672995
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| || || ||||| ||||||||||| || ||||| || | | || ||
Sbjct 19672996 TAATAGGAGAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTTCACATTATAAGTT 19673055
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| ||||| ||||||| | |||| ||||
Sbjct 19673056 GGTGGACTCTCAATCAAATGTGACCGGGCT 19673085
>seq9
Length=61074082
Score = 104 bits (114), Expect = 3e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022
|| || ||||| ||||| || ||||||||| | || || |||||| ||| | | |||
Sbjct 60196030 TCACCACCGAATGTGCTCGGCTTCCAGTACTCTGGAGAACAGATGGGATTCCCTAGGAGG 60196089
Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082
|| || | ||| || |||||||| | || || || ||||| || ||||||| | |||
Sbjct 60196090 CCCTTAAGGGAGAAGGGAGCCCCAATTTCTATCATACTCTCTCCAAAGATGGAATTTGGA 60196149
Query 9083 CGCGGTTTTTCGACGATGAAGCCA-GTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141
| || || | || | |||| | ||||| ||| | || || | ||| ||||| ||
Sbjct 60196150 TGGCACTTCTCCA-GAAGCAGCCCCGGGTAGAATTCCAAGGCATCAATGTCTCCATACAG 60196208
Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
| ||||||||||| || ||||||||||| |||
Sbjct 60196209 CTCCTCCAACTCGGCTGCCATCTCCTTCTCCCCT 60196242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723698435711200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |