Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq21 86.0 7e-12 seq17 82.4 9e-11 >seq21 Length=50858623 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||||| |||||||| |||| |||| | || ||||| || Sbjct 26618057 CTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCC 26617998 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 ||| |||| ||||| || || || || | ||| |||||||||||||| || || || Sbjct 26617997 CAAGTTCTGCTGGTTGCTTTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACC 26617938 Query 106612 CGTCTCCGTCTGTGACT 106628 ||||| ||||| |||| Sbjct 26617937 TGTCTCTGTCTGAGACT 26617921 >seq17 Length=64289059 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || |||| ||||||||||||||| |||||||| || || ||| || ||||| Sbjct 7112053 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCAT 7111994 Query 117045 AAAGTCAAATGGATT 117059 ||||||||||||||| Sbjct 7111993 AAAGTCAAATGGATT 7111979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589956699284320