Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq26 132 1e-25 seq1 122 2e-22 seq6 120 7e-22 seq4 120 7e-22 seq7 111 3e-19 seq9 98.7 2e-15 >seq26 Length=38964690 Score = 132 bits (146), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| |||| || || | ||||||||| Sbjct 5007564 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007505 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || ||||| || || ||||| || ||||| || Sbjct 5007504 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007445 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 5007444 ATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 5007388 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || ||||| || || ||||| | |||||| Sbjct 5007387 TTACCCGTCAAGGTCTTCACGAAGATCTGCATT 5007355 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| |||| || || | ||||||||| Sbjct 5007792 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007733 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || ||||| || || ||||| || ||||| || Sbjct 5007732 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007673 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 5007672 ATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 5007616 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || ||||| | ||||| Sbjct 5007615 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007584 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| |||| || || | ||||||||| Sbjct 5008020 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007961 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || ||||| || || ||||| || ||||| || Sbjct 5007960 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007901 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 5007900 ATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 5007844 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || ||||| | ||||| Sbjct 5007843 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007812 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| |||| || || | ||||||||| Sbjct 5008248 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5008189 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || ||||| || || ||||| || ||||| || Sbjct 5008188 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5008129 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 5008128 ATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 5008072 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || ||||| | ||||| Sbjct 5008071 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5008040 >seq1 Length=122678785 Score = 122 bits (134), Expect = 2e-22 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| || || || ||||| |||| || || | ||||||||| ||||| Sbjct 14875194 GTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCACCCATCTTCTAGCTG 14875253 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| | | || ||||| || || ||||| ||||| ||||| || || Sbjct 14875254 TTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCTTGGATCTT 14875313 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| ||||| |||||||| ||| ||||| || ||||| | ||||| || Sbjct 14875314 CCCTTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTACC 14875370 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || ||||| | ||||| Sbjct 14875371 AGTCAAGGTCTTCACGAAGATCTGCAT 14875397 >seq6 Length=77573801 Score = 120 bits (132), Expect = 7e-22 Identities = 157/215 (73%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||| ||||| |||||||| || || |||||||| | |||||| | |||||||| Sbjct 46134187 ACAAGGTAGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 46134246 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||||||||| | ||| || | || ||||| || || |||| ||||| || || Sbjct 46134247 AGCTGCTTACCTGCAACGATGAGCCTCTGCTGGTCAGG-GGGGTGCCCTCTTTATCCTGG 46134305 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || || ||||| ||||| ||| ||||| || ||||||| ||| Sbjct 46134306 ATCTTGGCCTTCACATTTTCAATAGTGTC---ACTGGGCTCCACCTCCAGGGTAATGGTC 46134362 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTTA 195143 || | |||| || || | ||| | ||||| || Sbjct 46134363 TTGCAGGTCAGGGTCTTCAGGAAGATCTGCATATA 46134397 >seq4 Length=88276631 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || || | ||||||||| Sbjct 13711210 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCACCCATCTTCC 13711151 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || | || ||||| | | || ||||| || || |||||||| ||||| || Sbjct 13711150 AGCTGTTTGCTGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 13711091 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||| ||||| |||||||| ||||| || || || | ||||| Sbjct 13711090 ATCTTTGCCTTGACATTCTCGATGGTGTCATTGGGCTCCACCTCCAGAGTGATGGTCTTA 13711031 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 13711030 CCAGTCAAGGTCTTCACGAAGATCTGCAT 13711002 Score = 118 bits (130), Expect = 2e-21 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| || |||||||| || | ||||||| |||||||| ||||| || || Sbjct 70238939 GTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTTCGGCCATCTTCTAGCTGTTTGCCC 70238880 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || || || || ||||| || || ||||| || |||||||| ||||| ||| Sbjct 70238879 GCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTG 70238820 Query 195064 ACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 || || ||||||||||| ||| || || |||||||| | || || || |||| Sbjct 70238819 ACATTTTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATAGTTTTGCCCGTCAGG 70238763 Query 195121 GTTTTTACGAACACTTGCAT 195140 || || || || | ||||| Sbjct 70238762 GTCTTCACAAAGATCTGCAT 70238743 >seq7 Length=80974532 Score = 111 bits (122), Expect = 3e-19 Identities = 146/200 (73%), Gaps = 7/200 (4%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| ||| ||||||| || | ||||||| |||||||| ||||| || || Sbjct 43111239 GTGGACTCTTTCTGA-TATTGTAGTCTGACAGAGTTCGGCCATCTTCTAGCTGTTTGCCC 43111297 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || || || || ||||| || || ||||| ||||||||||| ||||| ||| Sbjct 43111298 GCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCTTTGTCTTGGATTTTGGCTTTG 43111357 Query 195064 ACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 || || ||| ||||||| ||| || || |||||||| | || || || ||| Sbjct 43111358 ACATTTTCAGTGGTGTC---ACTGGGCTCGACCTCAAGGGTGATAGTTTTGCCCATCAGG 43111414 Query 195121 GTTTTTACGAACACTTGCAT 195140 || || || || | ||||| Sbjct 43111415 GTCTTCACAAAGAGCTGCAT 43111434 >seq9 Length=61074082 Score = 98.7 bits (108), Expect = 2e-15 Identities = 145/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || |||||| | || | ||||| |||||||| ||||| Sbjct 1878785 GTGCAGGGTGGACTCTTTCTGGATATTGCAGTCTGACAGAGTGTAGCCATCTTCCAGCTG 1878844 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 | ||||| || || || | || |||| || | || ||||| || ||||| ||||| Sbjct 1878845 TTCGCCTGCAAAAATCAGATGCTGCAGGTCAGGCAGGAT-CCTTCCTTATCTTGGATTTT 1878903 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| |||||||||||||| | || || || |||| | ||||||||||| Sbjct 1878904 GGCTTTGACATTCTCAATGGTGTCAGTGAGATCGACCTCCAGGGGGATGGTCTTTCCTGT 1878963 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || |||| || ||||| Sbjct 1878964 CTGGGTCTTCTCGAAGACCTGCAT 1878987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109435144618556