Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq13 129 7e-25
seq21 116 4e-21
seq17 105 8e-18
>seq13
Length=63241923
Score = 129 bits (142), Expect = 7e-25
Identities = 109/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | |||||||| || |||||||| |||
Sbjct 3818025 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTT 3818084
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| |||||||| ||||| || |||||||| || ||||||||
Sbjct 3818085 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 3818144
Query 19105 ACTAGTCTTTCTCC 19118
|| | |||||| ||
Sbjct 3818145 ACGACTCTTTCCCC 3818158
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731
|||||| || ||||||| ||| ||||||||||||||||| || ||||| || || |||
Sbjct 3799309 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTTTC 3799368
Query 18732 CATAAAATCAAATGGATTTT 18751
|||||||||||| |||||||
Sbjct 3799369 CATAAAATCAAAGGGATTTT 3799388
Score = 86.0 bits (94), Expect = 7e-12
Identities = 72/88 (82%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393
|||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct 3826420 AAAATCTT---ACCAAATTTTCATTCACGATTCCATCACTGGCTGCAAAAAAGGCTAATA 3826476
Query 19394 CATGTTTAATAAAATGTTTTTCATCTGA 19421
|| ||||||| || ||||||||
Sbjct 3826477 TGTGAGAGATAAAATACTTCTCATCTGA 3826504
>seq21
Length=50858623
Score = 116 bits (128), Expect = 4e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| |||| ||||| || |||| || || || ||||| ||||| || ||
Sbjct 26626585 TGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 26626526
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 26626525 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 26626466
Query 47448 TTTCTTACTCCATA 47461
|||||||| |||||
Sbjct 26626465 TTTCTTACACCATA 26626452
Score = 93.3 bits (102), Expect = 5e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| |||||||| |||||||| || | ||| ||| |||| || | ||| || || |
Sbjct 26628785 TCCAGCCATAGAAGTGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 26628726
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || |||||||| || || ||||| ||||||||||| | | || |
Sbjct 26628725 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTTTCAGCTGCCATCTTAAGAACGATTT 26628666
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220
| || | || ||||| || || ||||||| ||| || | ||| || ||||
Sbjct 26628665 TCTGGGAAATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGGA 26628615
Score = 86.0 bits (94), Expect = 7e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|| || | |||||| | || ||||| ||||| ||||||| ||||| || | | ||
Sbjct 26610076 GTACCAGCATTAAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 26610017
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719
|||||||||||| ||| ||| ||||| || || || || | ||| || | ||| |||
Sbjct 26610016 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACTCTCATCAAC 26609957
Query 48720 ATATATTGAGGTCTTTC 48736
|||| ||| ||||||||
Sbjct 26609956 ATATGTTGTGGTCTTTC 26609940
>seq17
Length=64289059
Score = 105 bits (116), Expect = 8e-18
Identities = 112/146 (77%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||| ||||||||| || || || ||| ||||||||
Sbjct 7112116 TTAGAAGTCAGCATCCAAGGTAAACGAATTCTCTG--TTGGACTTGACATCACTCCCATC 7112059
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | ||||| || |||||||| ||||| || || || | ||| |||
Sbjct 7112058 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 7111999
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| ||||||||||||| |||
Sbjct 7111998 TCCATAAAGTCAAATGGATTTTCTAC 7111973
Score = 102 bits (112), Expect = 9e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| ||||| || | ||||||||||| || | ||| |
Sbjct 7110694 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCT 7110635
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || || |||||||| || ||||| || || ||||| |
Sbjct 7110634 TGAGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGG 7110575
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 7110574 CCACAACCCGTTCTCC 7110559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562085837855520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |