Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq18 87.8 2e-12 seq12 82.4 1e-10 >seq18 Length=55844845 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 14196 CATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGTC 14255 ||||||||||| ||| ||||||||||| || || | |||| |||| || || || ||| Sbjct 41144366 CATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGTC 41144307 Query 14256 CCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTCT 14315 |||||||| | || | || || | ||||||| || || | || || || || || Sbjct 41144306 CCATCTCCTCCAGGCCTGGTCTCCACAAGCTCTGTGTCCTGGGTCTGGTCCTCCCCATCA 41144247 Query 14316 CGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCAC 14366 || | ||| || | | || || || || || || |||| |||||||||| Sbjct 41144246 CGCTGCCAGGTCAAGGTGATCTCCGCAGGGTAGAAGCCCAGAGCCCAGCAC 41144196 >seq12 Length=72498081 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || |||| || |||||||| ||| | |||||| || || || | |||| Sbjct 985568 CCCTCATGCTGCACGTGGCACGTGTATCTCTGCTCCTGTCCAGAGGGCACCACCACAGCT 985509 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || ||||||||||| || || | || || | |||||| || || Sbjct 985508 GCCCACTTCTGGAAGGTCCCATCTCCTGCAGGCCTGGTGTCCACAACCTCTGTGTCCTGG 985449 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || || || || | ||| || | | || || || || || || |||| Sbjct 985448 GTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGC 985389 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 985388 GCCCAGCACC 985379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629257493781280