Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1 320 2e-82 seq33 147 3e-30 seq12 102 9e-17 >seq1 Length=122678785 Score = 320 bits (354), Expect = 2e-82 Identities = 660/981 (67%), Gaps = 3/981 (0%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || || | ||| |||| ||| || | ||||| |||| ||| || || || || Sbjct 81989620 CAGATGCTCATCTAAACACTGGATGGCAAAGAGGTCAATGTCTGTGTCAAACTTGTTGGC 81989679 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || |||| ||||||| || ||| || | ||||| || || || Sbjct 81989680 AAACAAGTGGTGC---TTGCGTAGCATCCAGTTCAAGTCACCTGCTCCGAAAACACACAC 81989736 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||||| | || || || |||| || ||||| | || || || | || |||||||| Sbjct 81989737 AGAACGCACATGGACCCCACTGCACGGTGGGTAGGGGGCACCCTTAGAGACATCACCTTC 81989796 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| || |||||||| || || || |||||||| || |||| || || | Sbjct 81989797 AAAGTACTGCCATTTGACAAACCTTGCGATTGCATGCATGTCAGACATGTCATACTTCTG 81989856 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | | || || || | || || | ||| | |||||||| |||| || Sbjct 81989857 GCTTAAGGACAGCGAGCCTGGGACTTCAGGGATCCTCTGAATAGTGGCCCAGAGGTACTC 81989916 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| || | ||| ||||| |||| | |||| | | || Sbjct 81989917 ATCAGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATTTTTTCATTCTTTAG 81989976 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || | || ||||| || || ||||| || |||| ||| | Sbjct 81989977 CACATATTCTACATACTTCCTACTGACCACAAAATAAGCACTGCCTGAAAATAGAGGTGT 81990036 Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531 | ||| || |||||| || ||||| | || | ||| || || | | Sbjct 81990037 TTCAAGAGGTGGATGCATTTTGTCAGTCCCTGTGTTGGTCAGCTTTCCATTAACAACTGT 81990096 Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591 |||| |||||||| | | |||| | |||||| | || || ||||| |||| Sbjct 81990097 AAAATGCTTTTTCCACCTTTCTTTTTTGTTGGATGGCATTCTCTCAGTTTCTAGGTTGTT 81990156 Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651 |||| |||||||| |||| | ||| || || | ||| || |||| ||||| || Sbjct 81990157 TTCACCCATTAGCGATTTGAGCTTCCGGACAATTTCCAAGTTGGTTTTGATAGGAAAATC 81990216 Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCAT 160711 | || || | ||||||| ||||||||| | || |||| || |||||| ||| Sbjct 81990217 CATGCCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCATCCTATGGAGGTCCTGCAT 81990276 Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771 ||| || | || ||||| || || ||||| || || || || || ||||||| | ||| Sbjct 81990277 GCAGTTGAGGTCAGCCTGAACTCGACTCCATGAGGCATATACCACACTCTCTAGCTGACT 81990336 Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTT 160831 |||||| |||| |||| ||| || ||| | || || | ||| || ||||| | Sbjct 81990337 GGCCACGAAGATGTTACTGAAGCAGGACGCAATGCCAAGCACGGCAGCCAAGAAGGAATC 81990396 Query 160832 ATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAG 160891 || | ||| ||||||||| | ||| || | ||||||||| |||||||||||| || Sbjct 81990397 CTCGGATTTTTTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATGTAGATGGCCCTCAG 81990456 Query 160892 CAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTC 160951 | ||| || | |||||| || || ||||| | || ||||| || ||||| ||||| || Sbjct 81990457 GAGCCTGTCAAGCATCTCAATTTTGTGATGAACTACTATAGAATATGCTATGGGAAATTC 81990516 Query 160952 GGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCACA 161011 | || || ||| |||| | | | ||| || ||| ||||||| || ||| ||| Sbjct 81990517 TGCTTCTTCTTTACTAAGGGGTTCCATGATGTATTTGCGCCTCTTGATGAACGAATTACA 81990576 Query 161012 ATCCCGCGTCATGTTGATATA 161032 ||| | |||||||| ||||| Sbjct 81990577 ATCTCTGGTCATGTTTATATA 81990597 >seq33 Length=31377067 Score = 147 bits (162), Expect = 3e-30 Identities = 211/296 (71%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | | |||| || ||||| || || || || ||||||||||||||| || Sbjct 16880477 AGGGTGAGGCAGGCTGTTCCCGAGATCTTCCCAGAACCAAAAGTGTTGAAGAGGCACTTG 16880418 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| ||||||| |||||||||||| || || | |||||||| ||| || Sbjct 16880417 TAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTTGAGCTCC 16880358 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || | || | || || || | ||| || || || || || || |||| | Sbjct 16880357 AGCTGGGTGACATTTATCTTGTCCTTGTAGGCAGGCTGGACCACGACCCCATGATTCTTG 16880298 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||||||||| ||||||| ||| |||| | ||| | || ||||| || ||||||| Sbjct 16880297 CTGAAGGTGACCATGTTTTCCAGGCTCACAGGCTTGACTTTTTGCCATGTCACTATCAAG 16880238 Query 168393 ACCTCTTTATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAG 168445 | ||| |||| | ||||| || ||||| | ||||| || || |||||||| Sbjct 16880237 A---CTTCCTCGGGATTTTGCAGAGAGCATCTTAAGGAAGCGGGTGTATTCAGCAG 16880185 Score = 89.7 bits (98), Expect = 6e-13 Identities = 143/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 167898 GTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTT 167957 || || || |||| || || |||| ||| | ||| || || || ||||| ||||| Sbjct 16883185 GTCACTGTCCCCAGGTGCAGAACCTGGCAAACCACTTCC---TTCCCCACTTGTCTCTTG 16883129 Query 167958 GGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTT 168017 |||||||| || || | | ||| | || ||| || |||||| | || || | Sbjct 16883128 GGATCTTTGACGTGGAGGACGCTTATGACTGATGTGGTCCCATTGGGGTGCAAGAGAACC 16883069 Query 168018 TTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGT 168077 | || ||||| ||||||||||| || || ||||||||| | || ||||| || || || Sbjct 16883068 TCAGTACTGTTTTCAATCCCTGACCCAGCGACCTTCCAGGAGATCACAGGTGCTGGGCGG 16883009 Query 168078 GCTGTAGCAGAGCAGGTAATATTTA 168102 || | ||| |||| || ||||||| Sbjct 16883008 GCATTGGCAAAGCACGTGATATTTA 16882984 >seq12 Length=72498081 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| || |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 54772330 AGATACTTCGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 54772271 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || || ||||||| || || || || | ||| | ||||| | | ||| Sbjct 54772270 GGAATATAATTCTCGTAATTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCT 54772211 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 54772210 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAA 54772151 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 54772150 AGATAAAATTTGCA 54772137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577195620595680