Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq4 147 2e-30
seq26 107 1e-18
seq7 105 5e-18
seq39 100 2e-16
seq5 91.5 1e-13
>seq4
Length=88276631
Score = 147 bits (162), Expect = 2e-30
Identities = 170/228 (75%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| ||||| ||||| || || |||||||| || || ||||| || || |
Sbjct 13711456 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGGC 13711397
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| || || |||||||| ||| | ||||| || ||||| || || ||
Sbjct 13711396 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG-GGG 13711338
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| |||||||| ||||| | || ||||||| | || | |||||| | || ||
Sbjct 13711337 ATGCCCTCTTTTTCTTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACC 13711278
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| ||||| || || || ||||| ||||| || ||||| |||||||||
Sbjct 13711277 TCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATT 13711230
Score = 122 bits (134), Expect = 7e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| |||||||| || | ||||| ||||| || || || || || | | || || |
Sbjct 70238957 CGAAGCACCAAGTGCAAGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTTCGGCCA 70238898
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || |||||||| ||| | |||| | ||||| || ||||| || ||||| |||
Sbjct 70238897 TCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTG 70238838
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
||||| | ||| ||||||| |||| | |||||| | || || ||||| || |||
Sbjct 70238837 TCTTGGATTTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATA 70238778
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||| || | ||| || ||||| ||||||||
Sbjct 70238777 GTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 70238743
>seq26
Length=38964690
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| ||||| ||||| || || || || || || || ||||| || || |
Sbjct 5008494 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 5008435
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| || || |||||||| ||| | ||||| || ||||| || || ||
Sbjct 5008434 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 5008375
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| ||||| || | || || || | || | |||||| | || ||
Sbjct 5008374 ATGCCCTCCTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCACTGGGCTCCACC 5008315
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || || || || ||||| || || || ||||||||
Sbjct 5008314 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5008268
>seq7
Length=80974532
Score = 105 bits (116), Expect = 5e-18
Identities = 153/215 (71%), Gaps = 1/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| |||||||| || | ||||| ||||| ||| | || || || | | || || |
Sbjct 43111221 CGAAGCACCAAGTGCAAGGTGGACTCTTTCTGA-TATTGTAGTCTGACAGAGTTCGGCCA 43111279
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || |||||||| ||| | |||| | ||||| || || || || |||||||||
Sbjct 43111280 TCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCTTTG 43111339
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
||||| | ||| ||||||| |||| |||||| | || || ||||| || |||
Sbjct 43111340 TCTTGGATTTTGGCTTTGACATTTTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGATA 43111399
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||| | | ||| || ||||| | ||||||
Sbjct 43111400 GTTTTGCCCATCAGGGTCTTCACAAAGAGCTGCAT 43111434
>seq39
Length=123869142
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||| | ||||| || ||||||||||| || || | | || || |||
Sbjct 84745781 CAACACAAGATGAGGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 84745722
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||| ||| |||||| ||| |||||||| || || || || || || ||
Sbjct 84745721 CTCCAGTTGCTTGCCCGCAAATATCAGTCTCTGCTGATCAGGAGGGATTCCTTCCTTATC 84745662
Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
| ||| || | || || |||||| || || || | || || || ||||| || |
Sbjct 84745661 CAG-AATCTTGGCCTTTTCATTTTCTATTGTATCCGAGGGCTCAACCTCGAGAGTGATGG 84745603
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || || || | ||| ||||| || |||||||| ||
Sbjct 84745602 TCTTCCCCGTAAGGGTCTTAACGAAAATCTGCATCTT 84745566
>seq5
Length=88915250
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| | | || | || || || || || | ||| || ||||| ||||| | |
Sbjct 47888034 CCACCCCTCAGATGGAGAATCAGGTGGAGAGTTGACTTTTTCTGGATGTTGTAATCAGAA 47887975
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||| ||| | || | || ||||| || || ||
Sbjct 47887974 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 47887915
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| |||||||| || || | || || || |||| | |||||| | || ||
Sbjct 47887914 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 47887855
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || || ||||| || | |||||| || || |||||||||||
Sbjct 47887854 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 47887805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385203857200788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |