Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq26 159 3e-34 >seq26 Length=38964690 Score = 159 bits (176), Expect = 3e-34 Identities = 476/720 (66%), Gaps = 76/720 (11%) Strand=Plus/Minus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130 ||||||| |||||||| ||||| ||||||||| || |||| || | | | |||||||| Sbjct 7173602 CCACAGCCCTAGCTTCAGGTCT-AAAAAGAGTTGGCTTCTTCTGGGGGCAATGGAAGGCA 7173544 Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT- 1189 ||||||||||| ||||| ||||| ||||||| | ||||||||||| ||||||| |||| Sbjct 7173543 TTTTAAAGAAATGGCTTGGAAAAGAAATCTGTAGAGCACTTACATAGTCTTCCAAAAGTC 7173484 Query 1190 --TTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCC---GTGGTA 1244 | || | || ||||| ||| ||| | | | ||| || | |||||| Sbjct 7173483 CCCTCGACA---AGGGCTGTAATTCCAAGATGA---TTTTTCGTACATCACTTGGTGGTA 7173430 Query 1245 GTGGATG-------GCC--GTGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACA 1295 | |||| ||| |||||||| ||||||| | | | ||||||||||||||| Sbjct 7173429 GCTGATGGGTGGGTGCCATATGGGAGGACAGCAAGGTTTCCATAGAGCAGAGCAGGAACA 7173370 Query 1296 GGGCAAGCCCTGAAGATTTTGTAAAAATAGAGTAATGCCCACACACCCCCACCTGCCC-- 1353 |||||| || || | | || | ||| | | | || || || || || Sbjct 7173369 GGGCAAACCTGGATGGTCCTGGAGAAAGAAAATGAT----ACTGTGAGGCAAGTGACCAG 7173314 Query 1354 -CATACCTTAACCTGCCCA----AGCTTTCACCACCGAAGCTGTGCCGGACTGAGCCCCA 1408 || ||| |||||||| |||| | ||||| ||| || |||| |||| Sbjct 7173313 ACAGACC-ACCCCTGCCCAGCCCAGCTGTAACCAC--------TGCTGG-CTGAACCCC- 7173265 Query 1409 TCCAGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAG 1468 ||||||||||| || | ||| || || |||| |||| | | || ||| | || Sbjct 7173264 TCCAGTCTTTCCCTCTATCTGATGAGACAAGACCAGGCCCA--TGAAACA--GGCAGCAG 7173209 Query 1469 GACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAG----CGAGGCCGCCGCTTT 1524 ||| ||||||| | |||| | || | ||| ||| | | || ||| || Sbjct 7173208 GACACGGTAATACCTGTGTGGGAGAGCATGG--TGAGGGAGCACACAAAGC--CCGTTTC 7173153 Query 1525 GGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGG 1584 ||||||||| |||||| |||||||||||| || | || ||| ||||||||||| Sbjct 7173152 AGCAACAGCTTCTAGAGCCAGATGTGCTCGCCATGGTCTTCAGGA--GATATATAAAGGG 7173095 Query 1585 CTAGTTGTAAGG---AGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT------ 1635 || || ||| | || | || || ||||||| || ||| ||||| || Sbjct 7173094 TCAGCTGAGAGGAAAAAGAATGATCAATGTCCCGCCCATGGCAAAATCATTGCTCAGCTT 7173035 Query 1636 -----CAGAAAACATTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAG 1690 ||||||||| ||||| || ||| | | || | |||||| |||| |||| Sbjct 7173034 TTCTCCAGAAAACA-CTCAAAATTCTGCGGCCAAAGGTTAGGCGAAAGCAGGGCTGGAAG 7172976 Query 1691 GAA---ATGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGG 1747 ||| ||| |||||||| || ||||||||||| |||| || |||| | |||||| || Sbjct 7172975 GAAGCGCTGAGGTTACCCTCTAGGTGGGCAGATGCCTGACTCAGTGCAGACACACACAGG 7172916 Score = 93.3 bits (102), Expect = 4e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 171 CACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAG 230 ||||| || |||||||| |||| |||| |||||| ||||||||||||||||||| | || Sbjct 7175612 CACAAAATCCAAAACAGATTATGAGAAGAATTCAATATAATTTATTAAATAATTCCCGAG 7175553 Query 231 GGCTTCTTTAAGAAGCATTAA 251 |||| ||| ||| |||||||| Sbjct 7175552 GGCTCCTTCAAGGAGCATTAA 7175532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438542084824000