Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4 152 1e-31 seq26 145 1e-29 seq1 136 8e-27 seq39 125 1e-23 seq6 122 2e-22 seq37 100 6e-16 seq9 95.1 2e-14 seq25 93.3 8e-14 >seq4 Length=88276631 Score = 152 bits (168), Expect = 1e-31 Identities = 172/229 (75%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || ||||||||||| ||||| ||||| || || || || | Sbjct 13711457 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGG 13711398 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| || |||||||| | || || || || || || Sbjct 13711397 CAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG-GG 13711339 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || || ||||| ||||| |||| ||||| || || || ||| | || || || Sbjct 13711338 GATGCCCTCTTTTTCTTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCAC 13711279 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||| || ||||| || ||||| ||||| ||||| ||||||||| Sbjct 13711278 CTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATT 13711230 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || || || || ||||||| || || |||||||| ||||| || || || Sbjct 70238969 CCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGGATATTGTAGTCTGAC 70238910 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||| || |||||||| ||||| || ||||| || || | || || || || || Sbjct 70238909 AGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGG 70238850 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| || || ||||| ||||||||||| || ||| | || || || Sbjct 70238849 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGACC 70238790 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || ||||| |||| ||||| ||||| |||||||| Sbjct 70238789 TCAAGGGTGATAGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 70238743 >seq26 Length=38964690 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || |||||||||||||| || ||||| || || || || || Sbjct 5008495 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 5008436 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| || |||||||| | || || || || || || Sbjct 5008435 CAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 5008376 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| || || || || || || || ||| | || || || Sbjct 5008375 GATGCCCTCCTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCACTGGGCTCCAC 5008316 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || ||||| ||||| || || |||||||| Sbjct 5008315 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5008268 >seq1 Length=122678785 Score = 136 bits (150), Expect = 8e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || ||||||||||| || || ||||| || || || || || || | | || Sbjct 14875183 CGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCACCCA 14875242 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 |||||||| ||||| || |||||||| | || || || || || || || || || || Sbjct 14875243 TCTTCTAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTT 14875302 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| |||| ||||| || || || ||| | || || || |||| || || Sbjct 14875303 TCTTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 14875362 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| || || |||||||| Sbjct 14875363 GTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 14875397 Score = 113 bits (124), Expect = 9e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| | |||||||| || || |||||||| || || | || ||||| || | || Sbjct 93617927 AGAGTTAACTCTTTCTGGATGTTGTAATCAGAAAGGATGCGGCCATCTTCCAGCTTCTTG 93617986 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || || || || || ||||| || ||| | |||||||| ||||| || Sbjct 93617987 CCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTCCTTTATCTTGGATCTTGGCC 93618046 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| | || ||| | || || || |||| | || || |||| | || Sbjct 93618047 TTCACATTTTCGTTGGTGTCACTGGGCTCAACCTCCAGGATGATGGTATTGCAGGCCAGG 93618106 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| | ||||||||||| Sbjct 93618107 GTCTTCATGAATATCTGCAT 93618126 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| ||||| || || || || || ||||| || | || ||||| ||||| Sbjct 30583351 TGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACTGAGCACACCCATCTTCCAGTTGC 30583410 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||| ||||| || |||| | | | ||||||| ||||||| ||||||| Sbjct 30583411 TTGCCAGCAAAGTCCAGTCTCTGCTGATGAGAAAGAATTCCTTTCTTATCT-GAATCTTG 30583469 Query 82728 GCTTTTACATTTTCAATCGTATC 82750 || ||||||||||| | ||||| Sbjct 30583470 GCCTTTACATTTTCTACTGTATC 30583492 >seq39 Length=123869142 Score = 125 bits (138), Expect = 1e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 82612 GAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTC 82671 |||| || || || || || || || ||||| | | | | || || || ||||| || | Sbjct 84745767 GAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCCTCCAGTTGCTTGC 84745708 Query 82672 CAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTT 82731 | ||||| || ||||| || ||||| ||||| |||||||||||||| ||||||| || | Sbjct 84745707 CCGCAAATATCAGTCTCTGCTGATCAGGAGGGATTCCTTCCTTATCCAGAATCTTGGCCT 84745648 Query 82732 TTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACG 82791 || ||||||| || ||||| || || || || | ||| || ||||| || || | | Sbjct 84745647 TTTCATTTTCTATTGTATCCGAGGGCTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGG 84745588 Query 82792 TCTTTACAAATATCTGCAT 82810 |||| || || |||||||| Sbjct 84745587 TCTTAACGAAAATCTGCAT 84745569 >seq6 Length=77573801 Score = 122 bits (134), Expect = 2e-22 Identities = 162/224 (72%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 82587 CCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGA 82646 || |||| || || || | || ||||| || |||||||| || || |||||||| ||| Sbjct 46134172 CCCCTCAGGCGAAGGACAAGGTAGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGA 46134231 Query 82647 ATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATT 82706 | | || ||||| || || || || |||| ||| || || || || || || || | Sbjct 46134232 GTGCAGCCATCTTCCAGCTGCTTACCTGCAACGATGAGCCTCTGCTGGTCAGGGGGG-TG 46134290 Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || || ||||| || ||||| || || ||||||||||| || ||| | || || || ||| Sbjct 46134291 CCCTCTTTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGCTCCACCTCC 46134350 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||||| |||| ||||| | || |||||||| Sbjct 46134351 AGGGTAATGGTCTTGCAGGTCAGGGTCTTCAGGAAGATCTGCAT 46134394 >seq37 Length=30902991 Score = 100 bits (110), Expect = 6e-16 Identities = 167/238 (70%), Gaps = 19/238 (8%) Strand=Plus/Plus Query 82591 TCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTC 82650 ||| | |||| || | || ||| || | |||||||| ||| | ||||||| ||| | | Sbjct 12375630 TCAGATGCAGGACCAGGTACAGGGTCAACTCTTTCTGGATAATGAAATCAGAAAGAGTGC 12375689 Query 82651 T---ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTG-------ATCTGGA 82700 ||| ||||| || || || | |||||||| || ||||| || |||||| Sbjct 12375690 AGCAACCATCTTCCAGCTGCTTGCTTGCAAAGATGAGCCTTTGCTGTTGTTTTATCTGGC 12375749 Query 82701 ---GGT--ATTCC--TTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATT 82753 ||| || || |||| |||||| ||||| || || ||||||||||| |||| | Sbjct 12375750 AGGGGTGAATGCCCTTTCC--ATCTTGGATCTTGGCCTTCACATTTTCAATGCCATCACT 12375807 Query 82754 AGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| | |||| || || |||||||| ||||| ||||| | || || |||||| Sbjct 12375808 AGGTTCCATCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCATGAAGATTTGCATT 12375865 >seq9 Length=61074082 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || |||||||| || || |||||||| ||||| | || || ||| | || ||| Sbjct 1878777 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGCAGTCTGACAGAGTGTAGCCATCT 1878836 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || |||| || ||||| || || || | || || | || |||||||||||| Sbjct 1878837 TCCAGCTGTTCGCCTGCAAAAATCAGATGCTGCAGGTCAGGCAGGAT-CCTTCCTTATCT 1878895 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || ||||| ||||| ||||| || ||| | | || || |||| | || ||| Sbjct 1878896 TGGATTTTGGCTTTGACATTCTCAATGGTGTCAGTGAGATCGACCTCCAGGGGGATGGTC 1878955 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||| ||||| | || | |||||| Sbjct 1878956 TTTCCTGTCTGGGTCTTCTCGAAGACCTGCAT 1878987 >seq25 Length=51628933 Score = 93.3 bits (102), Expect = 8e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| ||||| || ||||||||||| ||||| || | ||| ||||| |||||||||||||| Sbjct 525346 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTCATCAGGAGGAATTCCTTCCTTATC 525405 Query 82718 TTGAATCTTTGCTTTTACATTTTC 82741 || ||||| || ||||||||||| Sbjct 525406 CTGGATCTTGGCCTTTACATTTTC 525429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981786089667852