Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1 192 7e-44 seq33 185 1e-41 >seq1 Length=122678785 Score = 192 bits (212), Expect = 7e-44 Identities = 604/930 (65%), Gaps = 13/930 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| |||| |||||||| || || | ||| || Sbjct 81989604 CCAGGGCTTTATGCCTCAGATGCTCATCTAAACACTGGATGGCAAAGAGGTCAATGTCTG 81989663 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || |||| ||| ||| | | | | ||||| || | || || | Sbjct 81989664 TGTCAAACTTGTTGGCAAACAAGTGGTGCTTG--CGT-AGCATCCAGTTCAAGTCACCTG 81989720 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || ||||| || ||||| || || || |||||||| || || |||| || | Sbjct 81989721 CTCCGAAAACACACACAGAACGCACATGGACCCCACTGCACGGTGGGTAGGGGGCACCCT 81989780 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 ||||| || || |||| ||||| || || ||||| | ||| || |||||||| | Sbjct 81989781 TAGAGACATCACCTTCAAAGTACTGCCATTTGACAAACCTTGCGATTGCATGCATGTCAG 81989840 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| | | | | || | || || || | || | ||||| | || Sbjct 81989841 ACATGTCATACTTCTGGCTTAAGGACAGCGAGCCTGGGACTTCAGGGATCCTCTGAATAG 81989900 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| |||| || || || || || || || || | ||||||||| |||| || Sbjct 81989901 TGGCCCAGAGGTACTCATCAGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGA 81989960 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | ||| | || || || ||| | || | ||| || || || | Sbjct 81989961 TTTTTTCATTCTTTAGCACATATTCTACATACTTCCTACTGACCACAAAATAAGCACTGC 81990020 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||| | ||| | | ||| || || |||||| || |||||| | | Sbjct 81990021 CTGAAAATAGAGGTGTTTCAAGAGGTGGATGCATTTTGTCAGTCCCTGTGTTGGTCAGCT 81990080 Query 162539 TTCCCTCTACGACC---ACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595 |||| | || || | || ||| ||||||| | | || ||| | | Sbjct 81990081 TTCCATTAACAACTGTAAAATG---CTTTTTCCACCTTTCTTTTTTGTTGGATGGCATTC 81990137 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 || || ||||| |||| |||| | | || |||| || || || || | | Sbjct 81990138 TCTCAGTTTCTAGGTTGTTTTCACCCATTAGCGATTTGAGCTTCCGGACAATTTCCAAGT 81990197 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 |||| || | ||||| || |||| || ||||| || | || ||||| | | || | Sbjct 81990198 TGGTTTTGATAGGAAAATCCATGCCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCA 81990257 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | | || ||||| | ||||| || || ||||| || |||||||| || || || | Sbjct 81990258 TCCTATGGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACTCGACTCCATGAGGCATATA 81990317 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | || ||||| | | | |||| || |||| || ||| || || | || || | || Sbjct 81990318 CCACACTCTCTAGCTGACTGGCCACGAAGATGTTACTGAAGCAGGACGCAATGCCAAGCA 81990377 Query 162836 CGGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 |||| |||| ||| || | ||| | || ||||| | |||||| | |||||| Sbjct 81990378 CGGCAGCCAAGAAGGAATCC--TCGGATTTTTTGTCCACGTGAATGCAGTAGAAATTCTG 81990435 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 ||| ||||||||||||||| | || || | |||||| || || || || || || || Sbjct 81990436 AGGCATGTAGATGGCCCTCAGGAGCCTGTCAAGCATCTCAATTTTGTGATGAACTACTAT 81990495 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTC 162983 |||||| |||||||| || || || || || Sbjct 81990496 AGAATATGCTATGGGAAATTCTGCTTCTTC 81990525 >seq33 Length=31377067 Score = 185 bits (204), Expect = 1e-41 Identities = 234/322 (73%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | ||||| || || || || |||||||| || || | | Sbjct 16880482 CAGAGAGGGTGAGGCAGGCTGTTCCCGAGATCTTCCCAGAACCAAAAGTGTTGAAGAGGC 16880423 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| ||||||| |||||| ||||| || || | || || || ||| Sbjct 16880422 ACTTGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTTGA 16880363 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 | | || || || | || | | ||||||||| | ||||||||| || || || |||| Sbjct 16880362 GCTCCAGCTGGGTGACATTTATCTTGTCCTTGTAGGCAGGCTGGACCACGACCCCATGAT 16880303 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| || ||| | || ||||| || |||| Sbjct 16880302 TCTTGCTGAAGGTGACCATGTTTTCCAGGCTCACAGGCTTGACTTTTTGCCATGTCACTA 16880243 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | | |||| |||||||||||||| ||||| ||||| |||| | Sbjct 16880242 TCAAGACTTCCTCGGGATTTTGCAGAGAGCATCTTAAGGAAGCGGGTGTATTCAGCAGCC 16880183 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 |||||||||| || ||||| Sbjct 16880182 TTTTTTCGTCTTGGGTCACCAC 16880161 Score = 100 bits (110), Expect = 3e-16 Identities = 174/251 (69%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||| || |||| | || || ||||||| ||| | || | ||| | ||| |||| Sbjct 16883203 ACAGTCTGCCTGAGGCTGGTCACTGTCCCCAGGTGCAGAACCTGGCAAACCACTTCCT-- 16883146 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | |||||||| || || |||||||| || || || | ||| | || ||||| ||||| Sbjct 16883145 -TCCCCACTTGTCTCTTGGGATCTTTGACGTGGAGGACGCTTATGACTGATGTGGTCCCA 16883087 Query 171623 TTACGATGTA---GAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | || | |||| | |||||| ||||| || || || || || || ||||| Sbjct 16883086 TTGGGGTGCAAGAGAACC---TCAGTACTGTTTTCAATCCCTGACCCAGCGACCTTCCAG 16883030 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 | || ||||| ||||| | ||| | ||| |||| || || |||| ||||||||| Sbjct 16883029 GAGATCACAGGTGCTGGGCGGGCATTGGCAAAGCACGTGATATTTAGCTGGTCTTCGAAG 16882970 Query 171740 AACTCATAGTG 171750 || | ||||| Sbjct 16882969 AAGTTGTAGTG 16882959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578408371052800