Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4 113 3e-20 seq26 111 1e-19 seq1 102 5e-17 seq5 91.5 1e-13 >seq4 Length=88276631 Score = 113 bits (124), Expect = 3e-20 Identities = 170/238 (71%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTT 33572 ||| | | |||| || ||||| || | ||||| || |||||| || || || ||||| Sbjct 13711466 AAATTAGACACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTT 13711407 Query 33573 GTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTG 33632 ||| |||| || ||||| | || |||| ||||| |||||||| ||||| | |||||| Sbjct 13711406 GTAGTCGGGCAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTG 13711347 Query 33633 ATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGC 33691 || | || | || ||||| || || ||| ||| | ||| || | |||||| | Sbjct 13711346 GTCAGGGGG-ATGCCCTCTTTTTCTTGGATCTTCCCTTTGA-CATTCTCGATGGTGTCAC 13711289 Query 33692 TTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | | ||||| || | ||||| || ||||| || || || || |||||||||||||| Sbjct 13711288 TGGGCTCCACCTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 13711231 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | |||||| || | ||| |||||| || || ||||| || || Sbjct 70238969 CCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGGATATTGTAGTCTGAC 70238910 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||||| || |||||||||| ||||||||| || |||| Sbjct 70238909 AGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGG 70238850 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| ||||| ||| | ||| ||| |||||| || | || || Sbjct 70238849 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGA-CATTTTCAATGGTGTCACTGGGCTCGAC 70238791 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || | || || |||||||||||||| Sbjct 70238790 CTCAAGGGTGATAGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 70238743 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| || || || |||| | || ||| Sbjct 13711210 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCACCCATCTTCC 13711151 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| | |||||| ||||| | |||||| || | || | ||||| ||||| Sbjct 13711150 AGCTGTTTGCTGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 13711091 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | |||| || | |||||| | | ||||| || | ||||| || || Sbjct 13711090 ATCTT-TGCCTTGACATTCTCGATGGTGTCATTGGGCTCCACCTCCAGAGTGATGGTCTT 13711032 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || || || ||||||||||| Sbjct 13711031 ACCAGTCAAGGTCTTCACGAAGATCTGCAT 13711002 >seq26 Length=38964690 Score = 111 bits (122), Expect = 1e-19 Identities = 169/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTT 33572 ||| | | |||| || ||||| || | ||||| || ||||| ||| || || ||||| Sbjct 5008504 AAATTAGACACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCCTTCTGGATGTT 5008445 Query 33573 GTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTG 33632 ||| ||||| || ||||| | || |||| ||||| |||||||| ||||| | |||||| Sbjct 5008444 GTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTG 5008385 Query 33633 ATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGC 33691 || | || | || || ||||| || ||| || ||| | || | |||||| | Sbjct 5008384 GTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT-AACGTTCTCGATGGTGTCAC 5008326 Query 33692 TTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | | ||||| || | ||||| || ||||| || || || || || ||||||||||| Sbjct 5008325 TGGGCTCCACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5008268 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| ||||| || ||||| | || ||| Sbjct 5007564 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007505 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | || || ||||| Sbjct 5007504 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007445 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | | | || | |||||| || | ||||| || | ||||| || || Sbjct 5007444 ATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 5007386 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 ||| || || || || || ||||||||||| || Sbjct 5007385 ACCCGTCAAGGTCTTCACGAAGATCTGCATTGT 5007353 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| ||||| || ||||| | || ||| Sbjct 5007792 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007733 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | || || ||||| Sbjct 5007732 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007673 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | | | || | |||||| || | ||||| || | ||||| || || Sbjct 5007672 ATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 5007614 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || || || ||||||||||| Sbjct 5007613 ACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007584 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| ||||| || ||||| | || ||| Sbjct 5008020 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007961 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | || || ||||| Sbjct 5007960 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007901 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | | | || | |||||| || | ||||| || | ||||| || || Sbjct 5007900 ATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 5007842 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || || || ||||||||||| Sbjct 5007841 ACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007812 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| ||||| || ||||| | || ||| Sbjct 5008248 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5008189 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | || || ||||| Sbjct 5008188 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5008129 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | | | || | |||||| || | ||||| || | ||||| || || Sbjct 5008128 ATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 5008070 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || || || ||||||||||| Sbjct 5008069 ACCCGTCAAGGTCTTCACGAAGATCTGCAT 5008040 >seq1 Length=122678785 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||| || || |||||||| ||||| || |||| | || || Sbjct 14875189 ACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCACCCATCTTCT 14875248 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | || ||||| || Sbjct 14875249 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCTTGG 14875308 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| ||| | ||| || | |||||| || | ||||| || | ||||| || || Sbjct 14875309 ATCTTCCCTTTGA-CATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 14875367 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || || || ||||||||||| Sbjct 14875368 ACCAGTCAAGGTCTTCACGAAGATCTGCAT 14875397 >seq5 Length=88915250 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| || | |||| || ||||| |||||| || ||||||||||| || Sbjct 39533993 ACCACCCCTCAGGCGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGA 39534052 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| || |||| Sbjct 39534053 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGG 39534112 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || || || ||| |||| || | |||||| || | |||| Sbjct 39534113 GATGCCCTCTTTATCCTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 39534171 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || |||| ||||| || |||||| |||| Sbjct 39534172 CCTCCAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCGGCAT 39534220 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| || | |||| || ||||| |||||| || ||||||||||| || Sbjct 39533765 ACCACCCCTCAGGCGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGA 39533824 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| || |||| Sbjct 39533825 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGG 39533884 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || || || ||| |||| || | |||||| || | |||| Sbjct 39533885 GATGCCCTCTTTATCCTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 39533943 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 39533944 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 39533993 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | |||| || ||||| |||||| || ||||||||||| || Sbjct 39533538 CCACCCCTCAGGCGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 39533597 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | |||||| || |||| Sbjct 39533598 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 39533657 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || ||||| || || || ||| |||| || | |||||| || | ||||| Sbjct 39533658 ATGCCCTCTTTATCCTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCAC 39533716 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || |||||||||||| Sbjct 39533717 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 39533765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328690908130560