Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5 107 5e-18 seq39 93.3 1e-13 seq7 84.2 5e-11 >seq5 Length=88915250 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| |||| ||||| |||||| ||||| Sbjct 39534205 AAAACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAT 39534146 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| || || ||| ||| || || || ||||| Sbjct 39534145 GTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCGCCTGACCAGCAGAGGCTCATCTTT 39534086 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 39534085 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCA 39534026 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 39534025 ACTCTCCACCTGGT 39534012 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| ||||| Sbjct 39533749 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAT 39533690 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| || || ||| ||| || || || ||||| Sbjct 39533689 GTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCGCCTGACCAGCAGAGGCTCATCTTT 39533630 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 39533629 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCA 39533570 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 39533569 ACTCTCCACCTGGT 39533556 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| ||||| Sbjct 39533977 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAT 39533918 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| || || ||| ||| || || || ||||| Sbjct 39533917 GTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCGCCTGACCAGCAGAGGCTCATCTTT 39533858 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 39533857 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCA 39533798 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 39533797 ACTCTCCACCTGGT 39533784 >seq39 Length=123869142 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || || || || ||| | ||| Sbjct 84745584 AAGACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAGCCCTCGGATACAATAGAAAAT 84745643 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 | |||| ||||||| || || |||||||| || || || ||||| || || Sbjct 84745644 GAAAAGGCCAAGATTCTGGATAAGGAAGGAATCCCTCCTGATCAGCAGAGACTGATATTT 84745703 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||| ||||| | |||||| | || |||||| | || || ||||| Sbjct 84745704 GCGGGCAAGCAACTGGAGGATGGCCGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 84745763 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| ||| ||||| ||||||||||| Sbjct 84745764 ACTCCTCATCTTGTGTTGAGACTTCG 84745789 >seq7 Length=80974532 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/122 (76%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 206261 AAGAAAAAGAAG-GAATTTTG--CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317 || ||||| ||| |||| | | || ||| || || || ||||| || || |||||| Sbjct 2307352 AAAAAAAAAAAGAGAATCTGGACCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGC 2307293 Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377 |||||||||| | ||| | | ||||||||| ||||||||||||| ||||| ||||| | Sbjct 2307292 TGGAAGATGGCCGCACTGTTTCTGATTACAACATCCAGAAAGAGTCAACTCTCCACCTGG 2307233 Query 206378 TT 206379 || Sbjct 2307232 TT 2307231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181771315685828