Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq21 100 3e-16 seq1 87.8 2e-12 seq26 86.0 6e-12 seq4 86.0 6e-12 seq39 82.4 7e-11 >seq21 Length=50858623 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | |||||||||||||||||| || |||||| || ||||| ||| Sbjct 26618041 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAAGTTCTGCTGGTTG 26617982 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 ||||||||||| || | |||||| ||||||||||||| Sbjct 26617981 CTTTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 26617944 >seq1 Length=122678785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | ||||| || || |||||||||||| || ||| | | | Sbjct 14875183 CGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCACCCA 14875242 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| | | ||| || || || || ||||| ||||| Sbjct 14875243 TCTTCTAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTT 14875302 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | || | || || | |||||||| || | || | Sbjct 14875303 TCTTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 14875362 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||||||||| || || | ||| ||||||||| Sbjct 14875363 GTCTTACCAGTCAAGGTCTTCACGAAGATCTGCATG 14875398 >seq26 Length=38964690 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | ||||| || || |||||||||||| || ||| || Sbjct 5008486 CAAGCGCAGGACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 5008427 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| |||||||| |||| | |||| | | ||| || || || || ||||| || Sbjct 5008426 CCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTC 5008367 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | || | || || | |||||||| || | || Sbjct 5008366 CTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 5008307 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || ||||| |||| || || | ||| ||||||||| Sbjct 5008306 GATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 5008267 >seq4 Length=88276631 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | || || || || |||||||||||| || ||| || Sbjct 13711448 CAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGGCAGGGTGCG 13711389 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| |||||||| |||| | |||| | | ||| || || || || ||||| || Sbjct 13711388 CCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG-GGGATGCCCTC 13711330 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || ||| | | || | || || | |||||||| || | || Sbjct 13711329 TTTTTCTTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGT 13711270 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || |||||||||| || || | || |||||||| Sbjct 13711269 GATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 13711231 >seq39 Length=123869142 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||||| ||| || || || || || | | Sbjct 84745762 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCCTCCAGTTGCTTGCCCGCA 84745703 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT--TTGTTTCA 132047 | || || | ||| ||||| ||||| || ||||| ||||| ||| || ||||| Sbjct 84745702 AATATCAGTCTCTGCTGATCAGGAGGGATTCCTTCCTTATCCAGAATCTTGGCCTTTTCA 84745643 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | ||||| | ||||| || |||| || | || || || || || || | Sbjct 84745642 --TTTTCTATTGTATCCGAGGGCTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTCT 84745585 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||||||||| Sbjct 84745584 TAACGAAAATCTGCAT 84745569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476591730432480