Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq33 248 1e-60 seq19 163 3e-35 seq7 158 1e-33 seq39 136 5e-27 seq20 105 8e-18 >seq33 Length=31377067 Score = 248 bits (274), Expect = 1e-60 Identities = 247/320 (77%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| || || | ||||||||| || || || ||| | | |||||| ||| Sbjct 16880161 GTGGTGACCCAAGACGAAAAAAGGCTGCTGAATACACCCGCTTCCTTAAGATGCTCTCTG 16880220 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | |||| || |||| || || ||||| ||| ||||||| | | || Sbjct 16880221 CAAAATCCCGAGGAAGTCTTGATAGTGACATGGCAAAAAGTCAAGCCTGTGAGCCTGGAA 16880280 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| | || ||||| ||||||||||| || || ||||||||| Sbjct 16880281 AACATGGTCACCTTCAGCAAGAATCATGGGGTCGTGGTCCAGCCTGCCTACAAGGACAAG 16880340 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||| |||||||||| | ||| | ||||||||||| || || |||||||||||| | Sbjct 16880341 ATAAATGTCACCCAGCTGGAGCTCAAGAACTCAACCATTACCTTCTGGAATACCACCCTG 16880400 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| ||||| |||||||| ||||| ||||| |||||||| |||||||| Sbjct 16880401 GAGGATGAAGGGTGTTACAAGTGCCTCTTCAACACTTTTGGTTCTGGGAAGATCTCGGGA 16880460 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 ||||||||||||||||| Sbjct 16880461 ACAGCCTGCCTCACCCTCTC 16880480 Score = 165 bits (182), Expect = 1e-35 Identities = 199/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| |||||||| || || || || || || ||||| || || |||| Sbjct 16882933 TCCCAGTACAGCCCACAGTGTTTCTTCACTACAACTTCTTCGAAGACCAGCTAAATATCA 16882992 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || | ||||||||||||||| ||||| ||| | |||||| | | ||||||| | Sbjct 16882993 CGTGCTTTGCCAATGCCCGCCCAGCACCTGTGATCTCCTGGAAGGTCGCTGGGTCAGGGA 16883052 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||||||||||| |||||||| | || | ||||| || || || || | || || | Sbjct 16883053 TTGAAAACAGTACTGAGGTTCTCTTGCACCCCAATGGGACCACATCAGTCATAAGCGTCC 16883112 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || ||||| |||||||| || |||| ||||| || | ||||| || ||||| Sbjct 16883113 TCCACGTCAAAGATCCCAAGAGACAAGTGGGGAAGGAAGTGGTTTGCCAGGTTCTGCACC 16883172 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGT 171658 |||| | || || | | | ||| | ||||| Sbjct 16883173 TGGGGACAGTGACCAGCCTCAGGCAGACTGT 16883203 >seq19 Length=53741614 Score = 163 bits (180), Expect = 3e-35 Identities = 218/303 (72%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||| ||||| || | ||| || | || || | || || Sbjct 21178168 GCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTTCTCGGTTG 21178109 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 | ||| ||| | | | ||| || | ||||| | ||| |||||||| ||||||| Sbjct 21178108 GCGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTTTCACTCCC 21178049 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAA 147462 ||| || || ||||||| || ||||| ||| ||| ||||| |||| |||||||||| Sbjct 21178048 CTGGAAGACAGTTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAA 21177989 Query 147463 ACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATAC 147522 || ||| ||||||| || | ||||| |||||||| || || | || ||||| || Sbjct 21177988 ACACCCTTCCAAAATACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAG 21177929 Query 147523 CTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCCCTGCGCGTC 147582 | |||||| || ||||| |||||||||||||||||||| | ||| | | | || | | Sbjct 21177928 CGCGCCTGCATGCCGAACACCGACAGCGTGCCCGTGCCCGTGCGGTCGTGCTTCCGGGCC 21177869 Query 147583 CCG 147585 ||| Sbjct 21177868 CCG 21177866 >seq7 Length=80974532 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 67495363 CTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 67495304 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||| |||||||| || ||||||||||| |||||||| || ||||| |||| Sbjct 67495303 GGGCACGCCCAGCCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGACAGCTCACCGTT 67495244 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| |||||||| || || ||||| Sbjct 67495243 CACCACATAGAACTGGCAGAGGGCATGGCACGGAGGTAGGGCCAT 67495199 Score = 138 bits (152), Expect = 1e-27 Identities = 131/170 (77%), Gaps = 12/170 (7%) Strand=Plus/Minus Query 178228 TTAAGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGG 178287 || || ||||| |||||||||| ||| |||| |||||||| ||||||||||||||||||| Sbjct 5935739 TTTAGAGTTACCTGGGTTGCCAAGCCCTGTCGGAGATGATCCAGTTTTACTTGGAGGAGG 5935680 Query 178288 TGATGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAA 178347 ||||||| | ||| ||||| ||| | ||| ||||| ||| | || || | Sbjct 5935679 TGATGCCCCGGGCTGAGAACCAC------------GACCCAGACATCAAGAACCACGTGA 5935632 Query 178348 ACTCTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 |||| ||||| || ||||| |||||||| || |||||||||| || ||| Sbjct 5935631 ACTCCCTGGGAGAGAAGCTCAAGACCCTCAGGCTGAGGCTGCGACGCTGT 5935582 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| || || || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 5933580 AGCTCCAGGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5933521 Query 178522 TAGAAGCTTACATGACAA 178539 ||||| | |||||||||| Sbjct 5933520 TAGAAACCTACATGACAA 5933503 >seq39 Length=123869142 Score = 136 bits (150), Expect = 5e-27 Identities = 137/174 (79%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 146907 CAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTG 146966 |||||| |||||||| ||||| | ||| || ||||| | ||||| || |||| || | Sbjct 113736672 CAGCTGTATTTTCAGCGGCTCAATGTGATTCAGGTAAATATGCGCATCTCCCAAAGTATA 113736613 Query 146967 CACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCA-GCG-AG 147024 | ||||| | ||||| ||||| ||| ||| || | |||||||||||||| ||| || Sbjct 113736612 TATGAAGTCACTTGGCTTCAGGCCTGTCTTGTGTGCAATCATGTAGGTGAGCAGGCGTAG 113736553 Query 147025 -TAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTA 147077 |||||||| ||||||||||| || ||||| |||||||| || ||||||||||| Sbjct 113736552 CTAGCTGGCGATGTTGAAGGGCACGCCCAGCCCCATGTCTCCTGACCTCTGGTA 113736499 >seq20 Length=58134056 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||| || | ||||| ||||||| |||| |||||||| Sbjct 42424928 GTATTCCCTGGTGTTCATCATTGGCCTGGTCGGCAACATCCTGGTGCTCCTGGTCCTCAT 42424987 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||| |||||||| || |||||||| ||||| ||| ||||||||||| | || Sbjct 42424988 GCAATACAGGAGGCTCAAGAGCATGACCAGCATCTACCTTCTCAACCTGGCCATATCGGA 42425047 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 |||||| | | ||||| || ||||| ||||| Sbjct 42425048 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGAT 42425080 Score = 102 bits (112), Expect = 1e-16 Identities = 197/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || |||| || | ||||||| ||||| | | |||||| Sbjct 42384083 GTATTCCCTGGTGTTCGTGATTGGTCTGCTGGGCAATGTGGTGGTGGTGGTGATCCTCAC 42384024 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||| ||| |||| ||||| |||||||||||| |||| ||||| || ||| Sbjct 42384023 AAAATACAAGAGACTCTGGATTATGACTAACATCTTCCTGCTCAATTTGGCCATTTCTGA 42383964 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || || |||||||| || ||| || |||| ||| Sbjct 42383963 CTTGCTCTTTCTATTCACTCTGGTATTCTGGATTCA-TTATACT-GGATGGAATGATTGG 42383906 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 || |||| | |||||||||| | || || |||| || ||| | || Sbjct 42383905 GTTTTTGGCCGTTC----CATGTGTAAGCTCATCTCTGGGCTTTATTACTTGGGCTTATA 42383850 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 | | || || | || ||||||||| |||| | ||| |||| || || Sbjct 42383849 CGGTGAGATCTTTTTCATCATCCTGCTGACCATAGACCGGTACCTGGC 42383802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583464164515200