Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq39 168 9e-37
seq21 127 3e-24
seq13 125 1e-23
seq17 120 4e-22
>seq39
Length=123869142
Score = 168 bits (186), Expect = 9e-37
Identities = 257/365 (70%), Gaps = 1/365 (0%)
Strand=Plus/Minus
Query 39808 CCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTT 39867
|| ||| ||||||||||||| ||||| |||||| || || ||||| |||||| | | |
Sbjct 94450234 CCGATCTGCTTTCTTCTTTATACAAGACATTGTCTCAATGGCATTGAAGAGAAATTCCCT 94450175
Query 39868 TTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTT 39927
||| | | |||||||| | | || | || | || |||||||| || || | ||||||
Sbjct 94450174 TTCTTTAGAATCTTTAATAAAAGTGACAATGAGGAGGCTATACATCTCAGAGTTGATGTT 94450115
Query 39928 TTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACA 39987
||| | | || || ||||| || ||||| ||||| |||| || || |||
Sbjct 94450114 TTCCACGACAATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCTTGGAT 94450055
Query 39988 AAATCTTTCCGCCAAATT-TTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046
||| | ||| |||| || | | || ||||| |||||||| || |||| || ||||| |
Sbjct 94450054 AAACCACTCCACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGCCAAAA 94449995
Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106
||| ||||||||| | || || ||| || | | ||| | | || || || |
Sbjct 94449994 TATGGGGTATAAAATATCTCTCCTCAGGTTTCGAGGATTCCCAATGCTGAATGTCCTTGG 94449935
Query 40107 ATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATA 40166
| | ||| || ||||||||||||||||| || ||||| || || || ||||| | ||| |
Sbjct 94449934 AAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAA 94449875
Query 40167 TATCA 40171
|| ||
Sbjct 94449874 TACCA 94449870
>seq21
Length=50858623
Score = 127 bits (140), Expect = 3e-24
Identities = 108/133 (81%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || ||||| ||||| ||||| || || || |||||||| ||||| | ||
Sbjct 26626585 TGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 26626526
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
||||||||||||||||| ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 26626525 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 26626466
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 26626465 TTTCTTACACCAT 26626453
Score = 105 bits (116), Expect = 9e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390
|| |||| || | ||| |||||||| ||||| || || || | ||| || || ||||| |
Sbjct 26604888 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCA 26604829
Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450
| || |||||||||||||| | || || | || || ||| | || ||||| || ||||
Sbjct 26604828 GGATGGCATAGTCAGGATGCTTAGTCGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTAT 26604769
Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
| | ||| | ||| || || || | |||| ||||| || ||||||||||
Sbjct 26604768 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 26604718
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566
||||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 26617189 ATATAGCTTTTCAAATTCCTCTCCCCAAACCTCATCCAATCCAGGACATTCATTTGGACA 26617130
Query 69567 CATCAATGACCA 69578
|||||| |||||
Sbjct 26617129 CATCAAAGACCA 26617118
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
||||||||||| || ||||| |||||||||||||| | || || || |||| | | |
Sbjct 26616515 ACTCGTTTCATGAACAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTGGCACGCTGT 26616456
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| ||||| || || || || | ||| |||||||| | ||| || ||||||| |||
Sbjct 26616455 TCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGT 26616396
Query 69715 TCTAGATATATCGC 69728
|| || || || ||
Sbjct 26616395 TCCAGGTAAATAGC 26616382
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || |||||||| | || ||||| || || || ||||| || |||||||| || |||
Sbjct 26610076 GTACCAGCATTAAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 26610017
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|||||||||||||| | || ||||| | ||||| || | | || | |||||||
Sbjct 26610016 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACTCTCATCAAC 26609957
Query 70111 ATATGCTGAGGTCGTTCTACC 70131
||||| || |||| |||| ||
Sbjct 26609956 ATATGTTGTGGTCTTTCTGCC 26609936
>seq13
Length=63241923
Score = 125 bits (138), Expect = 1e-23
Identities = 108/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| || ||||| |||||||||||||| ||||| | || ||
Sbjct 3818025 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTT 3818084
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| ||||||||||||||||| ||||| || |||||||| || ||||| ||
Sbjct 3818085 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 3818144
Query 39761 ACAAGTCTCTCTCC 39774
|| | ||| || ||
Sbjct 3818145 ACGACTCTTTCCCC 3818158
Score = 89.7 bits (98), Expect = 7e-13
Identities = 94/123 (76%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046
|||||||| || |||||||||||||| ||||||||||| || |||||||| || ||||
Sbjct 3826420 AAAATCTTACC---AAATTTTCATTCACGATTCCATCACTGGCTGCAAAAAAGGCTAATA 3826476
Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106
|| |||||||| || ||||| | | | | || ||||||| | || ||| ||||
Sbjct 3826477 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 3826536
Query 40107 ATA 40109
|||
Sbjct 3826537 ATA 3826539
>seq17
Length=64289059
Score = 120 bits (132), Expect = 4e-22
Identities = 102/126 (81%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || |
Sbjct 7110694 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCT 7110635
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| || ||||||||||| ||||| || || ||||| |
Sbjct 7110634 TGAGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGG 7110575
Query 39759 CAACAA 39764
| ||||
Sbjct 7110574 CCACAA 7110569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686880739775520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |