Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq39 118 8e-22 seq17 93.3 3e-14 seq13 86.0 5e-12 seq9 86.0 5e-12 seq1 82.4 6e-11 >seq39 Length=123869142 Score = 118 bits (130), Expect = 8e-22 Identities = 212/303 (70%), Gaps = 5/303 (2%) Strand=Plus/Plus Query 43721 TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAA 43780 || |||| || ||||| ||||| || ||||| |||| || ||||||||||| ||||| Sbjct 94449865 TACCATGGTATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAG 94449924 Query 43781 GTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840 || ||| | | || ||| | |||||| | | ||||| | || | | ||||| Sbjct 94449925 GTGGATCTTTCCAAGGACATTCAGCATTGGGAATCCTCGAAACCTGAGGAGAGATATTTT 94449984 Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT-CAATGAAAATTTGGT 43899 ||| | ||||||| || |||| || || || || ||||| || || || ||||| Sbjct 94449985 ATACCCCATATTTTGGCTTTCTTTGTGGCAAGTGATGGCATAGTAAAAGGATAACTTGGT 94450044 Query 43900 -TAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAA 43957 ||| ||||| ||||||||||| |||| |||||| | ||||| ||||| || ||| Sbjct 94450045 GGAGT-GGTTTATCCAAGAAGTTCAGATTA-TAGAAGCCCTCTGTTTCTATGGATTCCAA 94450102 Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAA 44017 |||| | | ||||| || | || || ||||| || || || || | || | || ||| Sbjct 94450103 ATTGTCGTGGAAAACATCAACTCTGAGATGTATAGCCTCCTCATTGTCACTTTTATTAAA 94450162 Query 44018 GAT 44020 ||| Sbjct 94450163 GAT 94450165 Score = 82.4 bits (90), Expect = 6e-11 Identities = 115/160 (72%), Gaps = 5/160 (3%) Strand=Plus/Plus Query 41118 TATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCT--- 41174 || || || ||||| |||||||| || || || || || ||||| || || || ||| Sbjct 113736499 TACCAGAGGTCAGGAGACATGGGGCTGGGCGTGCCCTTCAACATCGCCAGCTA-GCTACG 113736557 Query 41175 -CTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACAC 41233 |||||||| || |||||||||||| || | || || |||| || | | || Sbjct 113736558 CCTGCTCACCTACATGATTGCACACAAGACAGGCCTGAAGCCAAGTGACTTCATATATAC 113736617 Query 41234 GTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273 || ||||||| ||||||||| | |||||||| |||||| Sbjct 113736618 TTTGGGAGATGCGCATATTTACCTGAATCACATTGAGCCG 113736657 >seq17 Length=64289059 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| | ||||| || ||||| ||||| || |||||||| Sbjct 7108353 CGGTTTAGCCAAGAAGTTCAGATTA-CGGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 7108411 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || || || || ||||| ||||| || || || || || || |||||| Sbjct 7108412 CATGGAAAACATCCACTCTGAGATGTATAGTCTCCTCATTGACACTTATATTAAAGAT 7108469 >seq13 Length=63241923 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| ||||| || || ||||| | Sbjct 3799388 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACTAATTTCTTTGAGA 3799329 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| |||| ||| ||||| || Sbjct 3799328 AACGAGTTGCAGAGTATCAACG 3799307 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||||||||| | ||| || ||| ||||||| ||| | |||||||| Sbjct 3829914 TTTGTCATCTTTCCAATTCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCA 3829855 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || ||||| |||||||| || Sbjct 3829854 TCTTTCTGGACTGCAGAAGAGGT 3829832 >seq9 Length=61074082 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 10012166 AACAGTGGTTTGCACATAATCATCTTTGATGAAATTGATGCTATCTGCAAGCAGAGAGGG 10012225 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| || | ||||| ||| | Sbjct 10012226 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATT 10012285 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | |||||||| || || ||||| ||||| ||| Sbjct 10012286 GATGGGGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 10012327 >seq1 Length=122678785 Score = 82.4 bits (90), Expect = 6e-11 Identities = 181/270 (67%), Gaps = 1/270 (0%) Strand=Plus/Plus Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275 ||| | || || ||||||| || | ||||| || ||| | ||||| | || || ||| Sbjct 115620937 GTGCTCCAGTTCCTAGGACTCTACAAGAAATCTGGAAAACTTGTATTTTTAGGTTTGGAC 115620996 Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAAC 47335 |||||||| ||||| | | || |||||| |||| | | | || | || Sbjct 115620997 AATGCAGGCAAAACCACTCTTCTACACATGTCCAAAGATGACCGACTGGGCCAAAATGTT 115621056 Query 47336 CCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTT 47395 || |||||||||| ||| || ||| | || ||||||||||| || || |||| || ||| Sbjct 115621057 CCGACATTACATCTGACATCAGAAGAGCTGACAATTGCTGGAATGACTTTTACAACTTTT 115621116 Query 47396 GATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGAT 47455 || | || || | | |||||||| | | ||| ||||||| | | | || || Sbjct 115621117 GAGCTTGGTGGGC-CGGGCAAGCGCGCCGGGTTTGGAAAAATTACCTCCCAGCAATTAAT 115621175 Query 47456 GCTATAGTTTATATTGTAGACTGTGCAGAT 47485 | || || | | | || ||||||| |||| Sbjct 115621176 GGGATTGTCTTTCTGGTGGACTGTGTAGAT 115621205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397440169824340