Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq39 118 8e-22
seq17 93.3 3e-14
seq13 86.0 5e-12
seq9 86.0 5e-12
seq1 82.4 6e-11
>seq39
Length=123869142
Score = 118 bits (130), Expect = 8e-22
Identities = 212/303 (70%), Gaps = 5/303 (2%)
Strand=Plus/Plus
Query 43721 TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAA 43780
|| |||| || ||||| ||||| || ||||| |||| || ||||||||||| |||||
Sbjct 94449865 TACCATGGTATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAG 94449924
Query 43781 GTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840
|| ||| | | || ||| | |||||| | | ||||| | || | | |||||
Sbjct 94449925 GTGGATCTTTCCAAGGACATTCAGCATTGGGAATCCTCGAAACCTGAGGAGAGATATTTT 94449984
Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT-CAATGAAAATTTGGT 43899
||| | ||||||| || |||| || || || || ||||| || || || |||||
Sbjct 94449985 ATACCCCATATTTTGGCTTTCTTTGTGGCAAGTGATGGCATAGTAAAAGGATAACTTGGT 94450044
Query 43900 -TAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAA 43957
||| ||||| ||||||||||| |||| |||||| | ||||| ||||| || |||
Sbjct 94450045 GGAGT-GGTTTATCCAAGAAGTTCAGATTA-TAGAAGCCCTCTGTTTCTATGGATTCCAA 94450102
Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAA 44017
|||| | | ||||| || | || || ||||| || || || || | || | || |||
Sbjct 94450103 ATTGTCGTGGAAAACATCAACTCTGAGATGTATAGCCTCCTCATTGTCACTTTTATTAAA 94450162
Query 44018 GAT 44020
|||
Sbjct 94450163 GAT 94450165
Score = 82.4 bits (90), Expect = 6e-11
Identities = 115/160 (72%), Gaps = 5/160 (3%)
Strand=Plus/Plus
Query 41118 TATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCT--- 41174
|| || || ||||| |||||||| || || || || || ||||| || || || |||
Sbjct 113736499 TACCAGAGGTCAGGAGACATGGGGCTGGGCGTGCCCTTCAACATCGCCAGCTA-GCTACG 113736557
Query 41175 -CTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACAC 41233
|||||||| || |||||||||||| || | || || |||| || | | ||
Sbjct 113736558 CCTGCTCACCTACATGATTGCACACAAGACAGGCCTGAAGCCAAGTGACTTCATATATAC 113736617
Query 41234 GTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273
|| ||||||| ||||||||| | |||||||| ||||||
Sbjct 113736618 TTTGGGAGATGCGCATATTTACCTGAATCACATTGAGCCG 113736657
>seq17
Length=64289059
Score = 93.3 bits (102), Expect = 3e-14
Identities = 93/118 (79%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| |||| | ||||| || ||||| ||||| || ||||||||
Sbjct 7108353 CGGTTTAGCCAAGAAGTTCAGATTA-CGGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 7108411
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || || || || ||||| ||||| || || || || || || ||||||
Sbjct 7108412 CATGGAAAACATCCACTCTGAGATGTATAGTCTCCTCATTGACACTTATATTAAAGAT 7108469
>seq13
Length=63241923
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| ||||| || || ||||| |
Sbjct 3799388 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACTAATTTCTTTGAGA 3799329
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| |||| ||| ||||| ||
Sbjct 3799328 AACGAGTTGCAGAGTATCAACG 3799307
Score = 82.4 bits (90), Expect = 6e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | |||||||||||||| | ||| || ||| ||||||| ||| | ||||||||
Sbjct 3829914 TTTGTCATCTTTCCAATTCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCA 3829855
Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782
|| || ||||| |||||||| ||
Sbjct 3829854 TCTTTCTGGACTGCAGAAGAGGT 3829832
>seq9
Length=61074082
Score = 86.0 bits (94), Expect = 5e-12
Identities = 116/162 (72%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| ||| ||||||||| || || | |||||| | || || ||||| ||||| |||||
Sbjct 10012166 AACAGTGGTTTGCACATAATCATCTTTGATGAAATTGATGCTATCTGCAAGCAGAGAGGG 10012225
Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
||||| | ||||| ||||||||||| ||||| || | ||||| ||| |
Sbjct 10012226 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATT 10012285
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695
|| || || | |||||||| || || ||||| ||||| |||
Sbjct 10012286 GATGGGGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 10012327
>seq1
Length=122678785
Score = 82.4 bits (90), Expect = 6e-11
Identities = 181/270 (67%), Gaps = 1/270 (0%)
Strand=Plus/Plus
Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275
||| | || || ||||||| || | ||||| || ||| | ||||| | || || |||
Sbjct 115620937 GTGCTCCAGTTCCTAGGACTCTACAAGAAATCTGGAAAACTTGTATTTTTAGGTTTGGAC 115620996
Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAAC 47335
|||||||| ||||| | | || |||||| |||| | | | || | ||
Sbjct 115620997 AATGCAGGCAAAACCACTCTTCTACACATGTCCAAAGATGACCGACTGGGCCAAAATGTT 115621056
Query 47336 CCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTT 47395
|| |||||||||| ||| || ||| | || ||||||||||| || || |||| || |||
Sbjct 115621057 CCGACATTACATCTGACATCAGAAGAGCTGACAATTGCTGGAATGACTTTTACAACTTTT 115621116
Query 47396 GATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGAT 47455
|| | || || | | |||||||| | | ||| ||||||| | | | || ||
Sbjct 115621117 GAGCTTGGTGGGC-CGGGCAAGCGCGCCGGGTTTGGAAAAATTACCTCCCAGCAATTAAT 115621175
Query 47456 GCTATAGTTTATATTGTAGACTGTGCAGAT 47485
| || || | | | || ||||||| ||||
Sbjct 115621176 GGGATTGTCTTTCTGGTGGACTGTGTAGAT 115621205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397440169824340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |