Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq7 107 2e-18 seq5 89.7 4e-13 seq21 87.8 2e-12 >seq4 Length=88276631 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | ||||| || || || || ||||| || ||||||||||| Sbjct 70238971 TGCCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGGATATTGTAGTCTG 70238912 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | ||||| |||||||| || || |||| |||||||| || || |||| Sbjct 70238911 ACAGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCG 70238852 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||| ||| ||| | |||| | ||||| ||| || | Sbjct 70238851 GGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGA 70238792 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || || || |||| |||||||||||| || ||||||||||| ||||| |||| Sbjct 70238791 CCTCAAGGGTGATAGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 70238737 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| |||| ||||| || | || || || || || || ||||||||| | Sbjct 13711456 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGGC 13711397 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | ||||| | ||||| |||||||| ||||| | || | | ||| || || || || Sbjct 13711396 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG- 13711338 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||| || |||||| ||| | | || | ||||| ||| || || Sbjct 13711337 ATGCCCTCTTTTTCTTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACC 13711278 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || |||| || ||||||||||| ||||| Sbjct 13711277 TCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 13711231 >seq7 Length=80974532 Score = 107 bits (118), Expect = 2e-18 Identities = 162/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | ||||| || || || || ||||| ||| |||||||||| Sbjct 43111207 TGCCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGA-TATTGTAGTCTG 43111265 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | ||||| |||||||| || || |||| |||||||| || || || | Sbjct 43111266 ACAGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTG 43111325 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||| ||| ||| | |||| ||||| ||| || | Sbjct 43111326 GGATGCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAGTGGTGTCACTGGGCTCGA 43111385 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || |||| ||||||| |||| || |||||||||| ||||| Sbjct 43111386 CCTCAAGGGTGATAGTTTTGCCCATCAGGGTCTTCACAAAGAGCTGCAT 43111434 >seq5 Length=88915250 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || | || |||| |||| || | || || ||||| || || ||||| || Sbjct 39533537 GCCACCCCTCAGGCGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGA 39533596 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| | ||||| ||||| || || || | ||||| | ||| || || ||||| Sbjct 39533597 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGG 39533656 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||||||||| ||||||| |||| |||| | ||||| ||| || || Sbjct 39533657 GATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 39533716 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||||| ||||| || ||||| ||||| |||||| Sbjct 39533717 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 39533765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || ||||| || || ||||| || | |||| | Sbjct 39533778 CGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 39533837 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || ||||| | ||||||||| Sbjct 39533838 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCTTTA 39533897 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| |||| | ||||| ||| || || || || || || Sbjct 39533898 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 39533957 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||| ||||| || ||||| ||||| |||||| Sbjct 39533958 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 39533993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 27085 TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACAC 27144 |||| | ||||| ||||| || || || | ||||| | ||| || || || || | | Sbjct 47887970 TGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGC 47887911 Query 27145 CCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTA 27204 |||||||||| ||||||| |||| | |||| | ||||| ||| || || || | Sbjct 47887910 CCTCTTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCA 47887851 Query 27205 GAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | ||||| ||||| |||||||| ||||| ||||| Sbjct 47887850 GGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 47887808 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || ||||| || || ||||| || | |||| | Sbjct 39534006 CGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 39534065 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || ||||| | ||||||||| Sbjct 39534066 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCTTTA 39534125 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| |||| | ||||| ||| || || || || || || Sbjct 39534126 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 39534185 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || |||||||| ||||| |||| Sbjct 39534186 GTCTTGCCGGTTAGGGTTTTCACGAAGATCGGCAT 39534220 >seq21 Length=50858623 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTT 131089 |||||||| ||| || ||||| ||||| |||||||||||||| ||||| ||||| Sbjct 26621621 GCCAGGTCACAGCTGGCCTCCAAGGCTCCATAATAAATGGTTTCAAAGATTTGCTTATTC 26621562 Query 131090 AATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149 | | | | |||| ||||| ||||| | |||| | ||||||||| ||||| ||| Sbjct 26621561 AGTAGCTGGGCTTCTGGACTCTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAGA 26621502 Query 131150 CCCTGTATCCCAA 131162 || |||| ||||| Sbjct 26621501 CCTTGTACCCCAA 26621489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424917475394016