Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq10 291 3e-74 seq19 232 2e-56 seq21 165 3e-36 seq23 136 1e-27 seq38 132 2e-26 seq2 123 9e-24 seq28 87.8 7e-13 seq8 82.4 3e-11 >seq10 Length=69331447 Score = 291 bits (322), Expect = 3e-74 Identities = 241/289 (83%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 22402 CCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTAT 22461 ||| || ||| ||| ||||||||||||| ||||||||||||||||||| |||||| | Sbjct 18730962 CCGCAATCCGCTTCATTTTGCGAATATATGCGTAGAAACTGCCGGAAATCATCGTGGAAA 18731021 Query 22462 TCACTCCAGAGCGAT-GAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTG 22520 ||||||||||||||| |||||||| |||||||||| |||||||| |||||||| |||| Sbjct 18731022 TCACTCCAGAGCGATAGAAAACGTCTCAGTTTGCTATCGGAAAACGCTGTAACAAAGGTG 18731081 Query 22521 AACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGC 22580 ||||||||||||||| |||||||||| |||| |||| | ||||| || |||||||||| Sbjct 18731082 AACACTATCCCATATAACCAGCTCACAGTCTATCATAGACATACCTAACTCCGGATGAG- 18731140 Query 22581 ATTCATCAGGCGGGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTT 22640 | | |||| || ||||| |||||||||||||| |||| ||| ||||||| ||||||| | Sbjct 18731141 AATAATCATGCTGGCAACAATGTGAATAAAGGTCGGA-AAAGATTGTGCTAATTTTTC-T 18731198 Query 22641 TACGGTCTTTAAAAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAG 22689 ||| | |||| |||||| || |||||||||||||| | | |||||| Sbjct 18731199 TACCGACTTTCAAAAGGACGCTATATCCAGCTGAACTGACGATTTATAG 18731247 >seq19 Length=53741614 Score = 232 bits (256), Expect = 2e-56 Identities = 178/211 (84%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 22289 AGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTG 22348 |||||| ||| |||| || |||||||| | || |||| |||| |||||| | |||||||| Sbjct 21445093 AGTTGTTCATGTTGGGCAGGTTTAAATGAGAAGTGGTCAAACACACCCACGCATTGGCTG 21445152 Query 22349 AGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAAC 22408 | ||||| || ||||||||||| || || || ||||||| ||||||||||| ||| | Sbjct 21445153 ATACGAACAATATATTCTCAATGAAGCCATTTAGGAAATACGCCAGGTTTTCTCCGAGCC 21445212 Query 22409 ACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCC 22468 |||||||||||||||||||||| |||||||||||| ||| |||||||||| |||||||| Sbjct 21445213 ACGCCACATCTTGCGAATATATCTGTAGAAACTGCTGGAGATCGTCGTGGCATTCACTCT 21445272 Query 22469 AGAGCGATGAAAACGTTTCAGTTTGCTCATG 22499 |||||||||||||| |||| ||||||||| Sbjct 21445273 AGAGCGATGAAAACCATTCATCTTGCTCATG 21445303 >seq21 Length=50858623 Score = 165 bits (182), Expect = 3e-36 Identities = 122/141 (87%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 22244 CGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGG 22303 |||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||| Sbjct 4785009 CGCCTTGCGTGTAATATTTGCTCATGTTGAAAACGGGGGCGAAGAACTTGTCCATATTGG 4784950 Query 22304 CCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTG-GCTGAGACGAAAAACATA 22362 ||||| ||| |||||| ||||||| ||| || |||||| |||||||||||||||| Sbjct 4784949 TCACGTATAAGTCAAAAGTGGTGAACCTCTGCCCCGGATTGTCCTGAGACGAAAAACATT 4784890 Query 22363 TTCTCAATAAACCCTTTAGGG 22383 |||||||||||| ||| ||| Sbjct 4784889 GTCTCAATAAACCTTTTTGGG 4784869 >seq23 Length=52294480 Score = 136 bits (150), Expect = 1e-27 Identities = 102/120 (85%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 22442 GCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGA 22501 ||| |||||| || || |||||||||| |||||||||| ||||| |||| |||||| ||| Sbjct 38595561 GCCAGAAATCCTCCTGTTATTCACTCCCGAGCGATGAAGACGTTACAGTATGCTCAAGGA 38595502 Query 22502 AAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCA 22561 | || ||| ||||||||||||| | || |||||||||| |||||||||| |||| ||||| Sbjct 38595501 AGACAGTGCAACAAGGGTGAACCCCATACCATATCACCTGCTCACCGTCCTTCACTGCCA 38595442 >seq38 Length=23914537 Score = 132 bits (146), Expect = 2e-26 Identities = 89/98 (91%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 22543 TCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCGGGCAAGAATG 22602 |||||| |||||||||||||||||| ||| |||||||||||||| |||||||| |||| Sbjct 22760948 TCACCGA-TTTCATTGCCATACGGAACTCCTGATGAGCATTCATCGTGCGGGCAATAATG 22761006 Query 22603 TGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTT 22640 |||||||||| || |||||||||||||||||||||||| Sbjct 22761007 TGAATAAAGGACGAATAAAACTTGTGCTTATTTTTCTT 22761044 >seq2 Length=85426708 Score = 123 bits (136), Expect = 9e-24 Identities = 95/113 (84%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22330 CTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAG 22389 || |||| ||||||| ||| ||||||||||||||||| |||||||||||||| || || Sbjct 53393634 CTTACCCGGGGATTGTTTGACACGAAAAACATATTCTCCATAAACCCTTTAGGAAATTAT 53393693 Query 22390 GCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTG 22442 | |||||| ||| |||| |||||||||||||||||| |||| |||||||| Sbjct 53393694 GTTTTGTTTTCCCCGAAACAAGCCACATCTTGCGAATATCTGTGGAGAAACTG 53393746 >seq28 Length=41182112 Score = 87.8 bits (96), Expect = 7e-13 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 22415 CATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCG 22474 |||||||||||||| |||||||||||||||||||| || || | || ||||||| | Sbjct 15141139 CATCTTGCGAATATGCGTGTAGAAACTGCCGGAAATAATCCAGGAAGTCCCTCCAGAAAG 15141080 Query 22475 ATGAAAACGTTTCAGTTTGCTCATGGAAAACGG 22507 | |||||| | ||| | ||| ||||||||||| Sbjct 15141079 AGGAAAACCATGCAGATCGCTGATGGAAAACGG 15141047 >seq8 Length=74330416 Score = 82.4 bits (90), Expect = 3e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 22264 CCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTG 22323 ||||||| |||||||| || |||||||| ||||||||||| ||||||| |||||| Sbjct 68100248 CCCATGGAGAAAACGGACGCAAAGAAGTTAAGCATATTGGCCATCTTTAAATGCAAACTG 68100189 Query 22324 GTGAAACTCACCC 22336 ||||||||||||| Sbjct 68100188 GTGAAACTCACCC 68100176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184437642158424