Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9 100 3e-16 seq23 95.1 1e-14 seq17 86.0 7e-12 >seq9 Length=61074082 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 22222925 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCGTGCAGCCTAGTACCAAACTGA 22222866 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 22222865 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTTATA 22222806 Query 152149 ATCGT 152153 || || Sbjct 22222805 ATGGT 22222801 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| |||||||||||| || | ||||| || || Sbjct 22222925 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCGTGCAGCCTAGTACCAAACTGA 22222866 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| |||||||| || |||||||| || | | Sbjct 22222865 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTTATA 22222806 Query 117425 ATCGT 117429 || || Sbjct 22222805 ATGGT 22222801 >seq23 Length=52294480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 18184563 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 18184504 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | || | |||||| ||||||||||| |||||||| || ||| Sbjct 18184503 CCAATAGGCTGAAGCAAATTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 18184444 Query 117425 ATCGT 117429 || || Sbjct 18184443 ATAGT 18184439 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 18184563 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 18184504 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | || | |||||| ||||| || |||||||||||||||||| Sbjct 18184503 CCAATAGGCTGAAGCAAATTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 18184444 Query 152149 ATCGT 152153 || || Sbjct 18184443 ATAGT 18184439 >seq17 Length=64289059 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||||| ||||||||||| || || || ||||| Sbjct 7110692 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCTTG 7110633 Query 74832 AACCAAAAGA-TGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || | || | || || ||||| |||||||| ||||| || |||||||| Sbjct 7110632 AGCCAGAATATTGACGCA-AAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGGC 7110574 Query 74891 GACAAGGCGTT 74901 |||| |||| Sbjct 7110573 CACAACCCGTT 7110563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547193646226400