Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq19 152 4e-32 seq7 147 2e-30 seq39 89.7 4e-13 >seq19 Length=53741614 Score = 152 bits (168), Expect = 4e-32 Identities = 210/294 (71%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 30232 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30291 ||| ||||| || |||||||||||||| || || || | || || | || || ||||| Sbjct 21178175 GTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTTC 21178116 Query 30292 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30351 | || |||| ||| ||||||||||||||| || || ||||| |||||||| || Sbjct 21178115 TCGGTTGGCGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTTT 21178056 Query 30352 TACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30411 || ||| | ||| || || || | ||||||||| || ||| |||||||||| ||| Sbjct 21178055 CACTCCCCTGGAAGACAGTTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTC 21177996 Query 30412 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAG 30471 ||||| || |||||||||| || | ||||| || || || ||||| | | | || Sbjct 21177995 CTCCAAAACACCCTTCCAAAATACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAG 21177936 Query 30472 GCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTC 30525 || ||| | ||||| || ||||| |||| ||||||||||| | ||| Sbjct 21177935 GCTGTAGCGCGCCTGCATGCCGAACACCGACAGCGTGCCCGTGCCCGTGCGGTC 21177882 >seq7 Length=80974532 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 67495359 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 67495300 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || ||||||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 67495299 ACGCCCAGCCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGACAGCTCACCGTTCACC 67495240 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | ||| ||||||||||| || ||||| || Sbjct 67495239 ACATAGAACTGGCAGAGGGCATGGCACGGAGGTAGGGCCATCAG 67495196 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||| ||||| || |||||||||||||| || || || | || || | || || |||| Sbjct 67492838 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTT 67492779 Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 | | || |||| ||| ||||||||||||||| || || ||||| |||||||| | Sbjct 67492778 CTCGGTTGGCGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTT 67492719 Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 | || ||| | ||| || || || | ||||||||| || Sbjct 67492718 TCACTCCCCTGGAAGACAGTTCCTTAGCGTTTGTGGATCC 67492679 >seq39 Length=123869142 Score = 89.7 bits (98), Expect = 4e-13 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| | |||||||| || | || || |||||| | || || ||||||| | | Sbjct 113736671 AGCTGTATTTTCAGCGGCTCAATGTGATTCAGGTAAATATGCGCATCTCCCAAAGTATAT 113736612 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAG--AG- 29980 | || || | || | || || || ||| || |||||||| ||||| || || Sbjct 113736611 ATGAAGTCACTTGGCTTCAGGCCTGTCTTGTGTGCAATCATGTAGGTGAGCAGGCGTAGC 113736552 Query 29981 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 30033 |||||||||||||| ||||| || || ||||||||||| || ||||||||||| Sbjct 113736551 TAGCTGGCGATGTTGAAGGGCACGCCCAGCCCCATGTCTCCTGACCTCTGGTA 113736499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406294217164656