Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 seq4 113 4e-20 seq1 111 1e-19 seq26 105 6e-18 seq5 91.5 1e-13 >seq7 Length=80974532 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||| | ||||| || || |||| ||||| |||| || ||||| || || || Sbjct 43111434 ATGCAGCTCTTTGTGAAGACCCTGATGGGCAAAACTATCACCCTTGAGGTCGAGCCCAGT 43111375 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | ||| | |||||| ||||| ||||||||||| ||||| ||||| || || Sbjct 43111374 GACACCACTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCACCTGACCAG 43111315 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || |||||||| | ||||| | || | || || ||||| Sbjct 43111314 CAGCGTCTGATTTTTGCGGGCAAACAGCTAGAAGATGGCCGAACTCTGTCAGACTACAAT 43111255 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | ||| || ||||| ||||| || ||||| | || |||| |||||||| Sbjct 43111254 A-TCAGAAAGAGTCCACCTTGCACTTGGTGCTTCGCCTGCGAGGTGGCAT 43111206 >seq4 Length=88276631 Score = 113 bits (124), Expect = 4e-20 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| | || ||||| || ||||| || Sbjct 13711231 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTGGAGCCCAGT 13711290 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| || || ||||| ||||| ||||| || || || || Sbjct 13711291 GACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCC-CCTGACCAG 13711349 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||||| ||||||| | ||| | |||| |||||| Sbjct 13711350 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGCCCGACTACAAC 13711409 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || || | || ||||| |||| ||| |||| || Sbjct 13711410 ATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 13711456 >seq1 Length=122678785 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| || ||| | || || || || ||||| || Sbjct 14875398 CATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 14875339 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| |||||| || || ||||| ||||| ||||| || || || || Sbjct 14875338 TGACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCTGACCA 14875279 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||||||||||| | ||||| | | ||| | ||||| ||||| Sbjct 14875278 GCAGAGGTTGATCTTTGCCGGCAAACAGCTAGAAGATGGGTGCACCCTGTCCGACTACAA 14875219 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||| || |||||||| || | || ||||| |||| Sbjct 14875218 CATCCAGAAGGAGTCCACTCTGCACTTGGTCCTGCG 14875183 >seq26 Length=38964690 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| || ||| | || || || || ||||| || Sbjct 5008267 CATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 5008326 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || || ||||| || ||||| || || || || Sbjct 5008327 TGACACCATCGAGAACGTTAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 5008386 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||||||||||| ||||||| | ||| | ||||| ||||| Sbjct 5008387 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 5008446 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| || | || ||||| |||| ||| |||| || Sbjct 5008447 CATCCAGAAGGAGTCTACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 5008494 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| || ||| | || || || || ||||| || Sbjct 5007583 CATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 5007642 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || ||||| || ||||| || || || || Sbjct 5007643 TGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 5007702 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||||||||||| ||||||| | ||| | ||||| ||||| Sbjct 5007703 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 5007762 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | || |||| | || | |||| ||||| Sbjct 5007763 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGGCAT 5007813 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| || ||| | || || || || ||||| || Sbjct 5007811 CATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 5007870 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || ||||| || ||||| || || || || Sbjct 5007871 TGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 5007930 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||||||||||| ||||||| | ||| | ||||| ||||| Sbjct 5007931 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 5007990 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | || |||| | || | |||| ||||| Sbjct 5007991 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGGCAT 5008041 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| || ||| | || || || || ||||| || Sbjct 5008039 CATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 5008098 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || ||||| || ||||| || || || || Sbjct 5008099 TGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 5008158 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||||||||||| ||||||| | ||| | ||||| ||||| Sbjct 5008159 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 5008218 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | || |||| | || | |||| ||||| Sbjct 5008219 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGGCAT 5008269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | || || || || ||||| || Sbjct 5007356 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5007415 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || ||||| || ||||| || || || || Sbjct 5007416 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 5007475 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||||| ||||||| | ||| | ||||| |||||| Sbjct 5007476 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 5007535 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || |||| | || | |||| ||||| Sbjct 5007536 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGGCAT 5007585 >seq5 Length=88915250 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 39533764 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 39533705 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||| ||||| || || || || Sbjct 39533704 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCGCCTGACCAG 39533645 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 39533644 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 39533585 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||| || | || |||| |||| || |||||||| Sbjct 39533584 ATCCAGAAAGAGTCAACTCTCCACCTGGTCCTGCGCCTGAGGGGTGGC 39533537 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 39533992 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 39533933 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||| ||||| || || || || Sbjct 39533932 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCGCCTGACCAG 39533873 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 39533872 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 39533813 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || |||| |||| || ||||||| || Sbjct 39533812 ATCCAGAAAGAGTCAACTCTCCACCTGGTCCTGCGCCTGAGGGGTGGTAT 39533763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||||||||||| | || || || || ||||| || Sbjct 47887808 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 47887867 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||| ||||| || || || || Sbjct 47887868 GACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 47887927 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 47887928 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 47887987 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || |||| || | || || || | | | || |||||||| Sbjct 47887988 ATCCAGAAAAAGTCAACTCTCCACCTGATTCTCCATCTGAGGGGTGGC 47888035 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||| ||| || || ||||| || ||||||||| | || || || || ||||| || Sbjct 39534220 ATGCCGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 39534161 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||| ||||| || || || || Sbjct 39534160 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCGCCTGACCAG 39534101 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 39534100 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 39534041 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || |||| |||| || ||||||| || Sbjct 39534040 ATCCAGAAAGAGTCAACTCTCCACCTGGTCCTGCGCCTGAGGGGTGGTAT 39533991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434900633583360