Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq19 226 3e-54
seq7 165 7e-36
seq17 122 8e-23
>seq19
Length=53741614
Score = 226 bits (250), Expect = 3e-54
Identities = 270/362 (75%), Gaps = 6/362 (2%)
Strand=Plus/Plus
Query 34088 CCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAG--GGAGGGCTACC 34145
|| || |||||| |||||| ||| ||||||| || ||||| || | |||| ||
Sbjct 21177816 CCCCACGGGGAGCTGCAGTACCTGGGGCAGGTGGAGCACATCCTGAGCTGCGGGGC--CC 21177873
Query 34146 GGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACA 34205
||||| ||||| || || ||||| || || || |||||||||| ||||| || ||||
Sbjct 21177874 GGAAGCACGACCGCACGGGCACGGGCACGCTGTCGGTGTTCGGCATGCAGGCGCGCTACA 21177933
Query 34206 ACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCG 34265
||| | | |||||||| |||||||| || |||||||| | |||||||| || | |
Sbjct 21177934 GCCTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTATTTTGGAAGGGTGTTTTGG 21177993
Query 34266 AGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGG 34325
||||| |||||||||| | | ||| |||| ||| | ||||| || || ||| |||| |
Sbjct 21177994 AGGAGTTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAACTGTCTTCCAGGGGAG 21178053
Query 34326 TGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC-CCATCT 34384
|||| |||||||| || | ||||||||||||||| |||||| | ||| ||| ||| |
Sbjct 21178054 TGAAAATCTGGGATGCCAATGGGTCTCGAGACTTTTTGGACAGCCTGGGATTCGCCAAC- 21178112
Query 34385 CGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAG 34444
|| || || || || || ||||| | || || || |||||||| || |||||||| ||
Sbjct 21178113 CGAGAAGAAGGGGATTTAGGCCCAATTTATGGCTTTCAGTGGAGGCATTTTGGGGCAGAA 21178172
Query 34445 TA 34446
||
Sbjct 21178173 TA 21178174
Score = 226 bits (250), Expect = 3e-54
Identities = 270/362 (75%), Gaps = 6/362 (2%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| || |||||||| || || || | ||||| || || || || ||
Sbjct 21178174 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTTCT 21178115
Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
|| | ||| ||| ||| | |||||| ||||||||||||||| | || |||||||| ||
Sbjct 21178114 CG-GTTGGCGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTTT 21178056
Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTC 7077
||| |||| ||| || || ||||| | ||| |||| ||| | | |||||||||| |||
Sbjct 21178055 CACTCCCCTGGAAGACAGTTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTC 21177996
Query 7078 CTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAG 7137
||| | || |||||||| | |||||||| || |||||||| |||||||| | | ||
Sbjct 21177995 CTCCAAAACACCCTTCCAAAATACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAG 21177936
Query 7138 GTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTT 7197
| |||| || ||||| |||||||||| || || || ||||| || || ||||| |||
Sbjct 21177935 GCTGTAGCGCGCCTGCATGCCGAACACCGACAGCGTGCCCGTGCCCGTGCGGTCGTGCTT 21177876
Query 7198 CCGGTAGCCCTCC--CTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCCCCATGC 7255
|||| |||| | || ||||| || ||||||| ||| |||||| |||||| ||
Sbjct 21177875 CCGG--GCCCCGCAGCTCAGGATGTGCTCCACCTGCCCCAGGTACTGCAGCTCCCCGTGG 21177818
Query 7256 GG 7257
||
Sbjct 21177817 GG 21177816
>seq7
Length=80974532
Score = 165 bits (182), Expect = 7e-36
Identities = 133/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| ||||||||||| || || |||||||| |||||||||| ||||| || | |||
Sbjct 67495187 GATCTTCCTCTGATGGCCCTACCTCCGTGCCATGCCCTCTGCCAGTTCTATGTGGTGAAC 67495246
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| ||||||||||||||||| || || | || |||||||||||| | || ||||| |||
Sbjct 67495247 GGTGAGCTGTCCTGCCAGCTATACCAGAGGTCAGGAGACATGGGGCTGGGCGTGCCCTTC 67495306
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || ||||| |||||||| ||||||||||| ||
Sbjct 67495307 AACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 67495347
Score = 165 bits (182), Expect = 7e-36
Identities = 133/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| |||||||| ||||| || || |||||||| ||||| || | ||||
Sbjct 67495347 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGCCCC 67495288
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
|||||||| || | || || ||||||||||||||||| || ||| | || ||||| |||
Sbjct 67495287 ATGTCTCCTGACCTCTGGTATAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGG 67495228
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| |||||||| || || ||||||||||| |||||
Sbjct 67495227 CAGAGGGCATGGCACGGAGGTAGGGCCATCAGAGGAAGATC 67495187
Score = 105 bits (116), Expect = 6e-18
Identities = 118/155 (76%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352
|||| ||| | ||||| || || ||| |||| ||||| |||||||| || | |||||||
Sbjct 67492683 CCACAAACGCTAAGGAACTGTCTTCCAGGGGAGTGAAAATCTGGGATGCCAATGGGTCTC 67492742
Query 34353 GAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411
|||||||| |||||| | ||| ||| ||| | || || || || || || ||||| |
Sbjct 67492743 GAGACTTTTTGGACAGCCTGGGATTCGCCAAC-CGAGAAGAAGGGGATTTAGGCCCAATT 67492801
Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
|| || || |||||||| || |||||||| || ||
Sbjct 67492802 TATGGCTTTCAGTGGAGGCATTTTGGGGCAGAATA 67492836
Score = 105 bits (116), Expect = 6e-18
Identities = 118/155 (76%), Gaps = 2/155 (1%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| || |||||||| || || || | ||||| || || || || ||
Sbjct 67492836 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTTCT 67492777
Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
|| | ||| ||| ||| | |||||| ||||||||||||||| | || |||||||| ||
Sbjct 67492776 CG-GTTGGCGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTTT 67492718
Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052
||| |||| ||| || || ||||| | ||| ||||
Sbjct 67492717 CACTCCCCTGGAAGACAGTTCCTTAGCGTTTGTGG 67492683
>seq17
Length=64289059
Score = 122 bits (134), Expect = 8e-23
Identities = 231/340 (68%), Gaps = 9/340 (3%)
Strand=Plus/Plus
Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522
|| || || || || |||| ||||| ||||| | |||| |||||| | ||| | |
Sbjct 59033925 GATTACTCAGGTCAAGGAGGAGACCAACTGCAAAAGGTGACTGACACCATCAAGACCATC 59033984
Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582
|||||||| ||||| | | | |||| | ||||| || |||||||| ||||| | |||
Sbjct 59033985 CCTGATGAAAGAAGAACCATCCTGTGTGGTTGGAATCCAAAGGATCTTCCTCTTAAGGCC 59034044
Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAG 34642
|| || ||||| ||| ||||| ||||| | |||| |||||||||||||||
Sbjct 59034045 CTATGTCCCTGCCATGACCTATGCCAGTTCTATG-----AATGATGAGCTGTCCTGCCAG 59034099
Query 34643 CTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC--- 34699
| || || | || |||||| || | || ||||| |||||||| | || |||
Sbjct 59034100 TTGTACCACAGGTCACAAGACATAGGCCTGGGTGTGCCCCTCAACATTACCAGCTACACA 59034159
Query 34700 -GCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCA 34758
|| ||||| | ||||||| ||| || || || || || || | | ||
Sbjct 59034160 GGCCTTGCTCGCCTACATGACCGCACACATCACAGGCCTGAAGCCAGGTAACTTTGTAGG 59034219
Query 34759 TACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAG 34798
||| ||| | ||||| ||||| ||||| || ||| | |||
Sbjct 59034220 TACTTTGAGAGATGCACATATTTACCTAAATCACGTTGAG 59034259
Score = 122 bits (134), Expect = 8e-23
Identities = 231/340 (68%), Gaps = 9/340 (3%)
Strand=Plus/Minus
Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606
||| | ||| || ||||| ||||| ||||| | ||| ||| || | | || ||
Sbjct 59034259 CTCAACGTGATTTAGGTAAATATGTGCATCTCTCAAAGTACCTACAAAGTTACCTGGCTT 59034200
Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGC----GTAACTAGCAATGTTGA 6662
|| || || || ||| ||||||| | ||||| || ||| || | ||||||||
Sbjct 59034199 CAGGCCTGTGATGTGTGCGGTCATGTAGGCGAGCAAGGCCTGTGTAGCTGGTAATGTTGA 59034140
Query 6663 ACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCAT 6722
||||| || | || |||||| || | || || | ||||||||||||||| |||
Sbjct 59034139 GGGGCACACCCAGGCCTATGTCTTGTGACCTGTGGTACAACTGGCAGGACAGCTCATCAT 59034080
Query 6723 TCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCT 6782
| | ||||| ||||| ||| ||||| || || ||| | ||||| |||||||
Sbjct 59034079 T-----CATAGAACTGGCATAGGTCATGGCAGGGACATAGGGCCTTAAGAGGAAGATCCT 59034025
Query 6783 TCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGA 6842
| || ||||| | |||| | | | ||||| ||||||||| | ||| | ||||||
Sbjct 59034024 TTGGATTCCAACCACACAGGATGGTTCTTCTTTCATCAGGGATGGTCTTGATGGTGTCAG 59033965
Query 6843 TCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882
|||| | ||||| ||||| |||| || || || || ||
Sbjct 59033964 TCACCTTTTGCAGTTGGTCTCCTCCTTGACCTGAGTAATC 59033925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448244088480960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |