Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq19 226 3e-54 seq7 165 7e-36 seq17 122 8e-23 >seq19 Length=53741614 Score = 226 bits (250), Expect = 3e-54 Identities = 270/362 (75%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 34088 CCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAG--GGAGGGCTACC 34145 || || |||||| |||||| ||| ||||||| || ||||| || | |||| || Sbjct 21177816 CCCCACGGGGAGCTGCAGTACCTGGGGCAGGTGGAGCACATCCTGAGCTGCGGGGC--CC 21177873 Query 34146 GGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACA 34205 ||||| ||||| || || ||||| || || || |||||||||| ||||| || |||| Sbjct 21177874 GGAAGCACGACCGCACGGGCACGGGCACGCTGTCGGTGTTCGGCATGCAGGCGCGCTACA 21177933 Query 34206 ACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCG 34265 ||| | | |||||||| |||||||| || |||||||| | |||||||| || | | Sbjct 21177934 GCCTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTATTTTGGAAGGGTGTTTTGG 21177993 Query 34266 AGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGG 34325 ||||| |||||||||| | | ||| |||| ||| | ||||| || || ||| |||| | Sbjct 21177994 AGGAGTTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAACTGTCTTCCAGGGGAG 21178053 Query 34326 TGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC-CCATCT 34384 |||| |||||||| || | ||||||||||||||| |||||| | ||| ||| ||| | Sbjct 21178054 TGAAAATCTGGGATGCCAATGGGTCTCGAGACTTTTTGGACAGCCTGGGATTCGCCAAC- 21178112 Query 34385 CGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAG 34444 || || || || || || ||||| | || || || |||||||| || |||||||| || Sbjct 21178113 CGAGAAGAAGGGGATTTAGGCCCAATTTATGGCTTTCAGTGGAGGCATTTTGGGGCAGAA 21178172 Query 34445 TA 34446 || Sbjct 21178173 TA 21178174 Score = 226 bits (250), Expect = 3e-54 Identities = 270/362 (75%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || |||||||| || || || | ||||| || || || || || Sbjct 21178174 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTTCT 21178115 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || | ||| ||| ||| | |||||| ||||||||||||||| | || |||||||| || Sbjct 21178114 CG-GTTGGCGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTTT 21178056 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTC 7077 ||| |||| ||| || || ||||| | ||| |||| ||| | | |||||||||| ||| Sbjct 21178055 CACTCCCCTGGAAGACAGTTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTC 21177996 Query 7078 CTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAG 7137 ||| | || |||||||| | |||||||| || |||||||| |||||||| | | || Sbjct 21177995 CTCCAAAACACCCTTCCAAAATACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAG 21177936 Query 7138 GTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTT 7197 | |||| || ||||| |||||||||| || || || ||||| || || ||||| ||| Sbjct 21177935 GCTGTAGCGCGCCTGCATGCCGAACACCGACAGCGTGCCCGTGCCCGTGCGGTCGTGCTT 21177876 Query 7198 CCGGTAGCCCTCC--CTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCCCCATGC 7255 |||| |||| | || ||||| || ||||||| ||| |||||| |||||| || Sbjct 21177875 CCGG--GCCCCGCAGCTCAGGATGTGCTCCACCTGCCCCAGGTACTGCAGCTCCCCGTGG 21177818 Query 7256 GG 7257 || Sbjct 21177817 GG 21177816 >seq7 Length=80974532 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || |||||||| |||||||||| ||||| || | ||| Sbjct 67495187 GATCTTCCTCTGATGGCCCTACCTCCGTGCCATGCCCTCTGCCAGTTCTATGTGGTGAAC 67495246 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | || |||||||||||| | || ||||| ||| Sbjct 67495247 GGTGAGCTGTCCTGCCAGCTATACCAGAGGTCAGGAGACATGGGGCTGGGCGTGCCCTTC 67495306 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| ||||||||||| || Sbjct 67495307 AACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 67495347 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || |||||||| ||||| || | |||| Sbjct 67495347 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGCCCC 67495288 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || || ||||||||||||||||| || ||| | || ||||| ||| Sbjct 67495287 ATGTCTCCTGACCTCTGGTATAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGG 67495228 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||||| || || ||||||||||| ||||| Sbjct 67495227 CAGAGGGCATGGCACGGAGGTAGGGCCATCAGAGGAAGATC 67495187 Score = 105 bits (116), Expect = 6e-18 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | ||||| || || ||| |||| ||||| |||||||| || | ||||||| Sbjct 67492683 CCACAAACGCTAAGGAACTGTCTTCCAGGGGAGTGAAAATCTGGGATGCCAATGGGTCTC 67492742 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411 |||||||| |||||| | ||| ||| ||| | || || || || || || ||||| | Sbjct 67492743 GAGACTTTTTGGACAGCCTGGGATTCGCCAAC-CGAGAAGAAGGGGATTTAGGCCCAATT 67492801 Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || || |||||||| || |||||||| || || Sbjct 67492802 TATGGCTTTCAGTGGAGGCATTTTGGGGCAGAATA 67492836 Score = 105 bits (116), Expect = 6e-18 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || |||||||| || || || | ||||| || || || || || Sbjct 67492836 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTTCT 67492777 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || | ||| ||| ||| | |||||| ||||||||||||||| | || |||||||| || Sbjct 67492776 CG-GTTGGCGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTTT 67492718 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 ||| |||| ||| || || ||||| | ||| |||| Sbjct 67492717 CACTCCCCTGGAAGACAGTTCCTTAGCGTTTGTGG 67492683 >seq17 Length=64289059 Score = 122 bits (134), Expect = 8e-23 Identities = 231/340 (68%), Gaps = 9/340 (3%) Strand=Plus/Plus Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 || || || || || |||| ||||| ||||| | |||| |||||| | ||| | | Sbjct 59033925 GATTACTCAGGTCAAGGAGGAGACCAACTGCAAAAGGTGACTGACACCATCAAGACCATC 59033984 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 |||||||| ||||| | | | |||| | ||||| || |||||||| ||||| | ||| Sbjct 59033985 CCTGATGAAAGAAGAACCATCCTGTGTGGTTGGAATCCAAAGGATCTTCCTCTTAAGGCC 59034044 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAG 34642 || || ||||| ||| ||||| ||||| | |||| ||||||||||||||| Sbjct 59034045 CTATGTCCCTGCCATGACCTATGCCAGTTCTATG-----AATGATGAGCTGTCCTGCCAG 59034099 Query 34643 CTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC--- 34699 | || || | || |||||| || | || ||||| |||||||| | || ||| Sbjct 59034100 TTGTACCACAGGTCACAAGACATAGGCCTGGGTGTGCCCCTCAACATTACCAGCTACACA 59034159 Query 34700 -GCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCA 34758 || ||||| | ||||||| ||| || || || || || || | | || Sbjct 59034160 GGCCTTGCTCGCCTACATGACCGCACACATCACAGGCCTGAAGCCAGGTAACTTTGTAGG 59034219 Query 34759 TACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAG 34798 ||| ||| | ||||| ||||| ||||| || ||| | ||| Sbjct 59034220 TACTTTGAGAGATGCACATATTTACCTAAATCACGTTGAG 59034259 Score = 122 bits (134), Expect = 8e-23 Identities = 231/340 (68%), Gaps = 9/340 (3%) Strand=Plus/Minus Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606 ||| | ||| || ||||| ||||| ||||| | ||| ||| || | | || || Sbjct 59034259 CTCAACGTGATTTAGGTAAATATGTGCATCTCTCAAAGTACCTACAAAGTTACCTGGCTT 59034200 Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGC----GTAACTAGCAATGTTGA 6662 || || || || ||| ||||||| | ||||| || ||| || | |||||||| Sbjct 59034199 CAGGCCTGTGATGTGTGCGGTCATGTAGGCGAGCAAGGCCTGTGTAGCTGGTAATGTTGA 59034140 Query 6663 ACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCAT 6722 ||||| || | || |||||| || | || || | ||||||||||||||| ||| Sbjct 59034139 GGGGCACACCCAGGCCTATGTCTTGTGACCTGTGGTACAACTGGCAGGACAGCTCATCAT 59034080 Query 6723 TCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCT 6782 | | ||||| ||||| ||| ||||| || || ||| | ||||| ||||||| Sbjct 59034079 T-----CATAGAACTGGCATAGGTCATGGCAGGGACATAGGGCCTTAAGAGGAAGATCCT 59034025 Query 6783 TCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGA 6842 | || ||||| | |||| | | | ||||| ||||||||| | ||| | |||||| Sbjct 59034024 TTGGATTCCAACCACACAGGATGGTTCTTCTTTCATCAGGGATGGTCTTGATGGTGTCAG 59033965 Query 6843 TCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882 |||| | ||||| ||||| |||| || || || || || Sbjct 59033964 TCACCTTTTGCAGTTGGTCTCCTCCTTGACCTGAGTAATC 59033925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448244088480960