Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq19 232 6e-56 seq5 197 1e-45 seq1 183 3e-41 seq33 158 1e-33 seq39 113 4e-20 seq13 96.9 3e-15 >seq19 Length=53741614 Score = 232 bits (256), Expect = 6e-56 Identities = 383/550 (70%), Gaps = 7/550 (1%) Strand=Plus/Plus Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196 || || ||||| || | || || || | || |||||||||| | || || | ||| Sbjct 16731195 ACGCTGAACTGCATCGTCGCCGTGTCCCAGAACCTGGGCATTGGCAGGAACGGGGACCTG 16731254 Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCT---TCTTCC 2253 || ||||| || || | |||||||| || ||| |||| |||||| | || ||| Sbjct 16731255 CCCTGGCCCCCGCTCAGGAATGAATTCAAGTGTTTCCAAAGAATGACCACGAACTCCTCC 16731314 Query 2254 ACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATT 2313 || ||||||||| | || |||||||| || ||||||||||| || |||| | Sbjct 16731315 GTGGAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCC--TG 16731372 Query 2314 AAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGC 2371 | ||| | | ||||| || ||||||| ||| | |||||||| ||| |||| || || | Sbjct 16731373 AGAAGAATCGACCTTTAAAGGACAGAATTAATATAGTTCTCAGCAGAGACCTCAAGGAAC 16731432 Query 2372 CACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAG 2431 | |||| || ||||| ||| |||| |||||| | ||| | ||| | || ||| Sbjct 16731433 CTCCACAAGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCTTTAAAACTTACTGAGC 16731492 Query 2432 GACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATG 2491 |||||||||| | | | ||||| | | |||||||| | || || || ||||| ||| Sbjct 16731493 AACCAGAATTAGCAAATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATA 16731552 Query 2492 AGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAAT 2551 |||| ||| | | | | || | | | || ||| | ||||||||| |||| ||| Sbjct 16731553 AGGAAGCCATGAACAAACCAGGCCATCTTAGACTATTTGTGACAAGGATTATGCATGAAT 16731612 Query 2552 TTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAAT 2611 ||||| |||| |||| |||||||||||| || | ||||| |||| || | |||| Sbjct 16731613 TTGAAGGTGACACATTTTTCCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAAT 16731672 Query 2612 TTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATAT 2671 |||||||||| |||| || || || || || || |||| ||||||||||| ||| Sbjct 16731673 ACCCAGGTGTTCTTTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTAT 16731732 Query 2672 ATGaaaaaaa 2681 |||| || || Sbjct 16731733 ATGAGAAGAA 16731742 >seq5 Length=88915250 Score = 197 bits (218), Expect = 1e-45 Identities = 357/518 (69%), Gaps = 8/518 (2%) Strand=Plus/Minus Query 2170 ATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAACAT 2229 |||||||| || | || || | ||||| ||| | || || | |||||||| || || Sbjct 42956076 ATGGGCATCGGCAGGAACGGGGACCTGCCCTGGGCCCCGCTCAGGAATGAATTCAAGTAT 42956017 Query 2230 TTTCAAAAAATGACATCTTCTTCCACTGACTTA---AAACAGAATGTTGTAATTATGGGA 2286 || |||| |||||| | ||| ||| | ||||||||| | | |||||||| Sbjct 42956016 TTCCAAAGAATGACCACGAACTCCTCTGTGGAAGGTAAACAGAATTTGGCGATTATGGGT 42955957 Query 2287 AGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGAACAACAGAATAAATC 2344 | ||||||||||| || |||| | | ||| | | | ||| || ||||||| ||| Sbjct 42955956 TGGAAGACATGGTTCTCTATTCC--TGAGAAGAATCGACTTTTAAAGGACAGAATTAATA 42955899 Query 2345 TGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTA 2404 | |||||||| ||| |||| || || || |||| || ||||| ||| |||| |||| | Sbjct 42955898 TAGTTCTCAGCAGAGACCTCAAGGAACCTCCACAAGGAGCTCATTTTCTTGCCAAAA-TC 42955840 Query 2405 TAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTT 2464 | ||| | ||| | || ||| |||||||||| | | | ||||| | | || Sbjct 42955839 TGGATGATGCTTTAAAACTTACTGAGCAACCAGAATTAGCAAATAAAGTGGACATGGATT 42955780 Query 2465 GGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTACAAGATCTTGCAAACAGATGC 2524 ||||| | || || || ||||| ||| |||| ||| | | | | || | | | | Sbjct 42955779 GGATAGTGGGAGGCAGTTCTGTTTATAAGGAAGCCATGAACAAACCAGGCCATCTTAGAC 42955720 Query 2525 TGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAATC 2584 | ||| | ||||||||| |||| |||||||| |||| |||| |||||||||||| || Sbjct 42955719 TATTTGTGACAAGGATTATGCATGAATTTGAAAGTGACACATTTTTCCCAGAAATTGATT 42955660 Query 2585 TTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAA 2644 | ||||| |||| | | |||| |||||||||| |||| || || || || | Sbjct 42955659 TGGAGAAATATAAACTTCCGCCAGAATACCCAGGTGTTCTTTCTGATGTCCAGGAGGAGA 42955600 Query 2645 ATGGAATTAGATACAAATTTGAGATATATGaaaaaaaa 2682 | || |||| ||||||||||| ||||||| || ||| Sbjct 42955599 AAGGCATTAAGTACAAATTTGAAGTATATGAGAAGAAA 42955562 >seq1 Length=122678785 Score = 183 bits (202), Expect = 3e-41 Identities = 295/421 (70%), Gaps = 6/421 (1%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320 ||||||||| | || |||||||| || ||||||||||| || |||| | | ||| | Sbjct 42969810 AAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCC--TGAGAAGAATC 42969753 Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTG 2380 | ||||| || ||||||| ||| | |||||||| ||| | | || || || |||| | Sbjct 42969752 GACCTTTAAAGGACAGAATTAATATAGTTCTCAGCAGAGATC--AAGGAACCTCCACAAG 42969695 Query 2381 GGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAAT 2440 | |||| ||| |||| |||||| | ||| | ||| | || ||| |||||||| Sbjct 42969694 GAACTCATTTTCTTGCCAAAAGTCTGGATGATGCTTTAAAACTTACTGAGCAACCAGAAT 42969635 Query 2441 TAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCA 2500 || | | | ||||| | | ||||| || | | || || ||||| ||| |||| || Sbjct 42969634 TAGCAAATAAAGTGGACATGGTTTGGCTAGTGAGAGGCAGTTCTGTTTATAAGGAAGCCA 42969575 Query 2501 TTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTG 2560 | | | | | || | | | || ||| | ||||||||| |||| |||||||| ||| Sbjct 42969574 TGAACAAACCAGGCCATCTTAGACTATTTGTGACAAGGATTATGCATGAATTTGAAAGTG 42969515 Query 2561 ATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTG 2620 | |||| |||||||||||| || | ||||| |||| || | |||| ||||||| Sbjct 42969514 ACACATTTTTCCCAGAAATTGATTTGGAGAAATATAAACTTCTACCAGAATACCCAGGTG 42969455 Query 2621 TTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaa 2680 ||| |||| || || || || || || |||| ||||||||||| ||||||| || | Sbjct 42969454 TTCTTTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATGAGAAGA 42969395 Query 2681 a 2681 | Sbjct 42969394 A 42969394 Score = 132 bits (146), Expect = 4e-26 Identities = 288/431 (67%), Gaps = 4/431 (1%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGG 2322 ||||||||| | || |||||||| || ||||||||||| || |||||| || | Sbjct 77151799 AAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAAGAACCACCAA 77151740 Query 2323 CCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGG 2382 ||||| || ||||||| ||| | |||||||| || |||||| || || |||| || Sbjct 77151739 CCTTTAAAGGACAGAATTAATTTAGTTCTCAGCGGAGACCTTAGGGAACCTCCACAAGGA 77151680 Query 2383 GCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTA 2442 |||| ||| |||| |||||| | ||| | || | || |||| | | |||||||| Sbjct 77151679 ACTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTAAAACTTATTGAACAAGCAGAATTA 77151620 Query 2443 AAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT 2502 || | | |||| | |||||||| | || | || | ||| ||| |||| ||| Sbjct 77151619 GAAAATAAAATGGACATAGTTTGGATAGTGGGAAGTAGTTATGTTTATAAGGAACCCATG 77151560 Query 2503 ACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGAT 2562 | | | || | | | ||| | | | ||||||| | | |||||| |||| Sbjct 77151559 AAGAAGCCAGGCCATCTTAGGCTATCTGCGAGAAGGATTACAGAGGAGTTTGAAAGTGAC 77151500 Query 2563 ACA----TACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGG 2618 ||| || || |||||||| || | ||||| |||| || | |||| |||| Sbjct 77151499 ACATTTTTATTTGTCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAATACTCAGG 77151440 Query 2619 TGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaa 2678 ||| | |||| |||| || ||||| || | || ||||||||||| ||||||| || Sbjct 77151439 TGTCCTTTCTGATATGCAGGAGGAAAAAGGCAGTAAGTACAAATTTGAAGTATATGAGAA 77151380 Query 2679 aaaaaCATAAT 2689 || | |||| Sbjct 77151379 GAACAATTAAT 77151369 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | || || || ||||||||| Sbjct 13734881 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATCGTGGCCTTCTTTGAG 13734940 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 13734941 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 13735000 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 13735001 ATCGCCCTGTGGATGACTGA 13735020 >seq33 Length=31377067 Score = 158 bits (174), Expect = 1e-33 Identities = 182/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | || || |||||||||||||| || | |||| |||||||||| ||| Sbjct 16880233 GAAGTCTTGATAGTGACATGGCAAAAAGTCAAGCCTGTGAGCCTGGAAAACATGGTCACC 16880292 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || | || ||||| || || ||||| || ||||| || || || || | || Sbjct 16880293 TTCAGCAAGAATCATGGGGTCGTGGTCCAGCCTGCCTACAAGGACAAGATAAATGTCACC 16880352 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| | || | ||| |||| || ||||||||||| || || |||| ||||||||| Sbjct 16880353 CAGCTGGAGCTCAAGAACTCAACCATTACCTTCTGGAATACCACCCTGGAGGATGAAGGG 16880412 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||||||| | || ||||||||||| ||||||||||| || |||| || || || Sbjct 16880413 TGTTACAAGTGCCTCTTCAACACTTTTGGTTCTGGGAAGATCTCGGGAACAGCCTGCCTC 16880472 Query 1521 ACCCT 1525 ||||| Sbjct 16880473 ACCCT 16880477 >seq39 Length=123869142 Score = 113 bits (124), Expect = 4e-20 Identities = 129/173 (75%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||| |||||||||||||||| || | ||| ||||| || | |||| | Sbjct 113736671 AGCTGTATTTTCAGCGGCTCAATGTGATTCAGGTAAATATGCGCATCTCCCAAAGTATAT 113736612 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAAC---TG 118572 ||||| |||| || | || |||||| ||| ||||||||||| || | || | Sbjct 113736611 ATGAAGTCACTTGGCTTCAGGCCTGTCTTGTGTGCAATCATGTAGGTGAGCAGGCGTAGC 113736552 Query 118573 TAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTA 118625 |||||||| | || || || || ||||| ||||||||| |||| |||||||| Sbjct 113736551 TAGCTGGCGATGTTGAAGGGCACGCCCAGCCCCATGTCTCCTGACCTCTGGTA 113736499 >seq13 Length=63241923 Score = 96.9 bits (106), Expect = 3e-15 Identities = 278/422 (66%), Gaps = 7/422 (2%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGG 2322 ||||||||| |||| ||||||||||| |||||||| || | |||||| || | | | Sbjct 60458072 AAACAGAATTTTGTGATTATGGGAAGGAAGACATGACTTGCTCTTCCCTAGAAGAACTGA 60458013 Query 2323 CCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGG 2382 | ||| || ||||||| ||| | |||||||| ||| | || | | || ||| || Sbjct 60458012 CTTTTAAAGGACAGAATTAATTTAGTTCTCAGGAGAAAACTCAGGGGACCTCCATAAGGA 60457953 Query 2383 GCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTA 2442 ||| | ||| | || ||||| | ||| | || | || |||| | |||||||||| Sbjct 60457952 GCTTATTTTCTAGC-CAAAGTCTGGATTATGCCTTAAAACTTATTAACCAACCAGAATTA 60457894 Query 2443 AAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCA-T 2501 | | | | ||||| | | |||||| | | || | || ||||| ||| | || || Sbjct 60457893 ACAAAGAAAGTGGACATGGTTTGGACAGTGGGAGACAGTTCTGTGTATAAAGAAGCCACA 60457834 Query 2502 TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGA 2561 ||||| | || | | | || || | ||| |||| ||| ||||||| | Sbjct 60457833 AACAAG-CCAGGCCATCTCAAACTATTGGTGACAGGGATCACGCAGGCATTTGAAAAT-- 60457777 Query 2562 TACATACTTC--CCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGT 2619 |||| ||| ||||||| | || | | ||| || | ||| | |||| ||| || Sbjct 60457776 AACATTTTTCTTCCAGAAAATGATTTGGAGATATAGAAGCTTCTTCCAGAATACCCAAGT 60457717 Query 2620 GTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaa 2679 |||| |||| || | || ||||| | |||| || |||||||| | ||| |||| Sbjct 60457716 GTTCTTTCTGATGTCCGGGAGGAAAAAAGTATTAAGTAGAAATTTGAAGTGTATAAAAAG 60457657 Query 2680 aa 2681 || Sbjct 60457656 AA 60457655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414460291907152