Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq4 131 1e-25
seq7 122 7e-23
seq26 98.7 9e-16
seq1 89.7 4e-13
>seq4
Length=88276631
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | ||| | |||||| || | ||| |||||| || ||||| || || |
Sbjct 70238970 GCCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGGATATTGTAGTCTGA 70238911
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176
|| ||||| | || || ||||||||||||||||| || |||||||||||||| | ||
Sbjct 70238910 CAGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGG 70238851
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236
| || ||| ||||| |||||| ||||| | | | || || || | ||| ||
Sbjct 70238850 GATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGAC 70238791
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|| | |||||| |||| |||||||| || || |||||||| |||||||
Sbjct 70238790 CTCAAGGGTGATAGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCT 70238741
Score = 100 bits (110), Expect = 2e-16
Identities = 159/227 (70%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||| || ||||| | ||||| || || ||| || || || || || || ||||
Sbjct 13711456 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGGC 13711397
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || || | || || ||||||||||| ||||| || | | ||||||||| | |||
Sbjct 13711396 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAG-GGGG 13711338
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| || |||||| || ||| ||| ||||| || | | || || || | ||||||
Sbjct 13711337 ATGCCCTCTTTTTCTTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACC 13711278
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| ||||| | || || |||| || || |||||||| |||||
Sbjct 13711277 TCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 13711231
>seq7
Length=80974532
Score = 122 bits (134), Expect = 7e-23
Identities = 168/231 (73%), Gaps = 3/231 (1%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | ||| | |||||| || | ||| |||||| || ||||| || || |
Sbjct 43111208 GCCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTG-ATATTGTAGTCTGA 43111266
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175
|| ||||| | || || ||||||||||||||||| || |||||||||||||| |||||
Sbjct 43111267 CAGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGG 43111326
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| | || ||||||||| |||||| ||||| | | || || || | ||| |
Sbjct 43111327 G-ATGCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAGTGGTGTCACTGGGCTCGA 43111385
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || | |||||| |||| ||| |||| || || ||||||| |||||||
Sbjct 43111386 CCTCAAGGGTGATAGTTTTGCCCATCAGGGTCTTCACAAAGAGCTGCATCT 43111436
>seq26
Length=38964690
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||| || ||||| | ||||| || || || ||| || || || || || ||||
Sbjct 5008494 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 5008435
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || || | || || ||||||||||| ||||| || | | ||||||||| | |||
Sbjct 5008434 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 5008375
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| || ||| |||||| ||| ||| || | || | | || || || | ||||||
Sbjct 5008374 ATGCCCTCCTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCACTGGGCTCCACC 5008315
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| ||||| | || ||||||| || || || ||||| |||||
Sbjct 5008314 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5008268
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| || || | ||| | |||| || || ||| ||| || || || || || ||
Sbjct 5007586 CATGCCCCCCCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 5007527
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
|| || || || | || || ||||||||||| ||||| || | | ||||||||| |
Sbjct 5007526 GGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 5007467
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233
||| | || ||| |||||| ||| ||| |||| || | | || || || | |||
Sbjct 5007466 GGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTC 5007407
Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| | || ||||||| || || || ||||| |||||
Sbjct 5007406 CACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007356
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| || || | ||| | |||| || || ||| ||| || || || || || ||
Sbjct 5007814 CATGCCCCCCCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 5007755
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
|| || || || | || || ||||||||||| ||||| || | | ||||||||| |
Sbjct 5007754 GGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 5007695
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233
||| | || ||| |||||| ||| ||| |||| || | | || || || | |||
Sbjct 5007694 GGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTC 5007635
Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| | || ||||||| || || || ||||| |||||
Sbjct 5007634 CACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007584
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| || || | ||| | |||| || || ||| ||| || || || || || ||
Sbjct 5008042 CATGCCCCCCCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 5007983
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
|| || || || | || || ||||||||||| ||||| || | | ||||||||| |
Sbjct 5007982 GGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 5007923
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233
||| | || ||| |||||| ||| ||| |||| || | | || || || | |||
Sbjct 5007922 GGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTC 5007863
Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| | || ||||||| || || || ||||| |||||
Sbjct 5007862 CACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007812
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| || || | ||| | |||| || || ||| ||| || || || || || ||
Sbjct 5008270 CATGCCCCCCCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 5008211
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
|| || || || | || || ||||||||||| ||||| || | | ||||||||| |
Sbjct 5008210 GGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 5008151
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233
||| | || ||| |||||| ||| ||| |||| || | | || || || | |||
Sbjct 5008150 GGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTC 5008091
Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| | || ||||||| || || || ||||| |||||
Sbjct 5008090 CACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5008040
>seq1
Length=122678785
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || ||| ||| || || || || || |||| || || | | || ||
Sbjct 14875189 ACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCACCCATCTTCT 14875248
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||||||||| ||||| || | | ||||||||| | ||| | || |||||| || |
Sbjct 14875249 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCTTGG 14875308
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|| ||| ||||| || | | || || || | |||||| |||| ||||| | ||
Sbjct 14875309 ATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 14875368
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| |||| || || || ||||| |||||
Sbjct 14875369 CCAGTCAAGGTCTTCACGAAGATCTGCAT 14875397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429528491735684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |