Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq7 172 4e-38 seq19 132 4e-26 seq39 104 2e-17 >seq7 Length=80974532 Score = 172 bits (190), Expect = 4e-38 Identities = 137/165 (83%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 67495359 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 67495300 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || ||||||||||| |||||||||||||| |||||||| || ||||| |||| | Sbjct 67495299 ACGCCCAGCCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGACAGCTCACCGTTCACC 67495240 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||||||||| |||||||| ||| Sbjct 67495239 ACATAGAACTGGCAGAGGGCATGGCACGGAGGTAGGGCCATCAGA 67495195 >seq19 Length=53741614 Score = 132 bits (146), Expect = 4e-26 Identities = 198/281 (70%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||||||||||||| || || || | || || | || || ||||| | || |||| Sbjct 21178162 AAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTTCTCGGTTGGCGAAT 21178103 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| || || ||||| |||||||| || || ||| | Sbjct 21178102 CCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTTTCACTCCCCTGGAA 21178043 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30196 || || || || | ||||||||| || ||| |||||||||| |||||||| || || Sbjct 21178042 GACAGTTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCC 21177983 Query 30197 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCC 30256 |||||||| || | ||||| || || || ||||| | | | |||| ||| | |||| Sbjct 21177982 TTCCAAAATACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCC 21177923 Query 30257 TGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297 || || |||| |||| |||||||| || | ||| Sbjct 21177922 TGCATGCCGAACACCGACAGCGTGCCCGTGCCCGTGCGGTC 21177882 >seq39 Length=123869142 Score = 104 bits (114), Expect = 2e-17 Identities = 128/173 (74%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 29636 AGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGG 29695 ||||| || ||||||| || | ||| | ||||| | || |||||||||| || | Sbjct 113736671 AGCTGTATTTTCAGCGGCTCAATGTGATTCAGGTAAATATGCGCATCTCCCAAAGTATAT 113736612 Query 29696 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAG--AG- 29752 | || || | || | || || || ||| || |||||||| ||||| || || Sbjct 113736611 ATGAAGTCACTTGGCTTCAGGCCTGTCTTGTGTGCAATCATGTAGGTGAGCAGGCGTAGC 113736552 Query 29753 TAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTA 29805 |||||||||||||| |||||||| || ||||||||||| |||||||||||||| Sbjct 113736551 TAGCTGGCGATGTTGAAGGGCACGCCCAGCCCCATGTCTCCTGACCTCTGGTA 113736499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406147023027448