Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq39 132 4e-26 seq17 89.7 4e-13 seq13 89.7 4e-13 >seq39 Length=123869142 Score = 132 bits (146), Expect = 4e-26 Identities = 222/320 (69%), Gaps = 1/320 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| |||| ||||| | || || ||||||||||| ||||| | || ||||| | || Sbjct 94450164 TCTTTAATAAAAGTGACAATGAGGAGGCTATACATCTCAGAGTTGATGTTTTCCACGACA 94450105 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || || ||||| || || || |||||| | | |||||||| | ||| | || Sbjct 94450104 ATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCTTGGATAAACCACTCC 94450045 Query 4932 ACTAAGTT-TTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 || ||||| | | |||||||| || ||||| || |||| || ||||||| ||| | ||| Sbjct 94450044 ACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGCCAAAATATGGGGTAT 94449985 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||| || || ||||| || || ||| || | | || || | | ||| || Sbjct 94449984 AAAATATCTCTCCTCAGGTTTCGAGGATTCCCAATGCTGAATGTCCTTGGAAAGATCCAC 94449925 Query 5051 TTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 |||||| | |||||||| || || || ||||| || ||||| ||||||| || | || Sbjct 94449924 CTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATACCATGGTA 94449865 Query 5111 CTGAATCGGAAGTATGACAA 5130 || || | || ||||||| Sbjct 94449864 CTCGATAAGGAGAATGACAA 94449845 >seq17 Length=64289059 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || |||||||| | || ||||| | || | || || Sbjct 7110692 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCTTG 7110633 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| || ||||| ||||| ||||| || Sbjct 7110632 AGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGGCC 7110573 Query 4692 AC 4693 || Sbjct 7110572 AC 7110571 >seq13 Length=63241923 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || ||||||||||||||||| || || | Sbjct 3826420 AAAATCTT---ACCAAATTTTCATTCACGATTCCATCACTGGCTGCAAAAAAGGCTAATA 3826476 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 3826477 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 3826536 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 3826537 ATAAGTCAAC 3826546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || || | ||||| || || |||||||||||||| |||||||| ||||| ||||| Sbjct 3799309 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTTTC 3799368 Query 4319 CATAAAATCAAACGGATT 4336 |||||||||||| ||||| Sbjct 3799369 CATAAAATCAAAGGGATT 3799386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427032591148244