Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq39 132 4e-26
seq17 89.7 4e-13
seq13 89.7 4e-13
>seq39
Length=123869142
Score = 132 bits (146), Expect = 4e-26
Identities = 222/320 (69%), Gaps = 1/320 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| |||| ||||| | || || ||||||||||| ||||| | || ||||| | ||
Sbjct 94450164 TCTTTAATAAAAGTGACAATGAGGAGGCTATACATCTCAGAGTTGATGTTTTCCACGACA 94450105
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931
|| || ||||| || || || |||||| | | |||||||| | ||| | ||
Sbjct 94450104 ATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCTTGGATAAACCACTCC 94450045
Query 4932 ACTAAGTT-TTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990
|| ||||| | | |||||||| || ||||| || |||| || ||||||| ||| | |||
Sbjct 94450044 ACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGCCAAAATATGGGGTAT 94449985
Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050
||| || || ||||| || || ||| || | | || || | | ||| ||
Sbjct 94449984 AAAATATCTCTCCTCAGGTTTCGAGGATTCCCAATGCTGAATGTCCTTGGAAAGATCCAC 94449925
Query 5051 TTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110
|||||| | |||||||| || || || ||||| || ||||| ||||||| || | ||
Sbjct 94449924 CTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATACCATGGTA 94449865
Query 5111 CTGAATCGGAAGTATGACAA 5130
|| || | || |||||||
Sbjct 94449864 CTCGATAAGGAGAATGACAA 94449845
>seq17
Length=64289059
Score = 89.7 bits (98), Expect = 4e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || |||||||| | || ||||| | || | || ||
Sbjct 7110692 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCTTG 7110633
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || || |||||||| || ||||| ||||| ||||| ||
Sbjct 7110632 AGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGGCC 7110573
Query 4692 AC 4693
||
Sbjct 7110572 AC 7110571
>seq13
Length=63241923
Score = 89.7 bits (98), Expect = 4e-13
Identities = 98/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || || ||||| || || || || ||||||||||||||||| || || |
Sbjct 3826420 AAAATCTT---ACCAAATTTTCATTCACGATTCCATCACTGGCTGCAAAAAAGGCTAATA 3826476
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| ||||| |||| || || | ||||| || |||||||| || | ||| || |
Sbjct 3826477 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 3826536
Query 5041 TTAAATCAAC 5050
||| |||||
Sbjct 3826537 ATAAGTCAAC 3826546
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318
||| || || | ||||| || || |||||||||||||| |||||||| ||||| |||||
Sbjct 3799309 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTTTC 3799368
Query 4319 CATAAAATCAAACGGATT 4336
|||||||||||| |||||
Sbjct 3799369 CATAAAATCAAAGGGATT 3799386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427032591148244
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |