Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq39 163 4e-35 seq21 118 1e-21 seq13 105 9e-18 seq17 95.1 2e-14 >seq39 Length=123869142 Score = 163 bits (180), Expect = 4e-35 Identities = 273/391 (70%), Gaps = 3/391 (1%) Strand=Plus/Minus Query 48332 CCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 48391 || ||| || |||||||||| ||||| |||||| || || ||||| |||||||| | | Sbjct 94450234 CCGATCTGCTTTCTTCTTTATACAAGACATTGTCTCAATGGCATTGAAGAGAAATTCCCT 94450175 Query 48392 ttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATT 48451 ||| || |||||||| |||| | || | || |||||||| || |||| || || Sbjct 94450174 TTCTTTAGAATCTTTAATAAAAGTGACAATGAGGAGGCTATACATCTCAGAGTTGATGTT 94450115 Query 48452 TTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACA 48511 ||| | | || || ||||| || ||||| |||||| | ||||| || || Sbjct 94450114 TTCCACGACAATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCTTGGAT 94450055 Query 48512 AAATCGTTCAGCCAAATTCTCATTT-ACTATTCCATCACTAGCAGCAAAAAATGCTAATA 48570 ||| | || |||| || || ||| ||||| |||||||| || |||| || || || | Sbjct 94450054 AAACCACTCCACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGCCAAAA 94449995 Query 48571 CATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC-AGTCATTGATATCTTTT 48629 ||| ||||||||| | || | | || | ||||| | | | || || || Sbjct 94449994 TATGGGGTATAAAATATCTCTCCTCAGGTTTC-GAGGATTCCCAATGCTGAATGTCCTTG 94449936 Query 48630 GATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCAT 48689 || | ||| || ||||||||||||||||| || ||||| ||||| |||||||| | ||| Sbjct 94449935 GAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAA 94449876 Query 48690 ATATCACTGTATTGGATTGGGAAAATAACAA 48720 ||| || ||| | ||| ||| ||| |||| Sbjct 94449875 ATACCATGGTACTCGATAAGGAGAATGACAA 94449845 >seq21 Length=50858623 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| || || ||||| ||||| || || || |||||||| ||||| | || Sbjct 26626585 TGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 26626526 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 26626525 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 26626466 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 26626465 TTTCTTACACCAT 26626453 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || |||||||| | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 26610076 GTACCAGCATTAAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 26610017 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || ||||| || || | || | ||||||| Sbjct 26610016 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACTCTCATCAAC 26609957 Query 78519 ATATGCTGAGGTCTTTC 78535 ||||| || |||||||| Sbjct 26609956 ATATGTTGTGGTCTTTC 26609940 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||| || Sbjct 26617189 ATATAGCTTTTCAAATTCCTCTCCCCAAACCTCATCCAATCCAGGACATTCATTTGGACA 26617130 Query 77975 CATCAATGACCAGTC 77989 |||||| |||||||| Sbjct 26617129 CATCAAAGACCAGTC 26617115 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| || ||||| || ||||| ||||||| || || || | || | ||| Sbjct 26616515 ACTCGTTTCATGAACAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTGGCACGCTGT 26616456 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| ||||| || ||||| || | ||| |||||||| | ||| || ||||||| ||| Sbjct 26616455 TCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGT 26616396 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 26616395 TCCAGGTAAATAGCAAATGCCCCAGGTCG 26616367 >seq13 Length=63241923 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | ||| | Sbjct 3818023 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 3818082 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||| ||||| || || ||||||||||| ||||| || |||||||| || ||||| | Sbjct 3818083 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 3818142 Query 48283 C 48283 | Sbjct 3818143 C 3818143 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 |||||| || | || |||||||| || ||||||||||| ||||| || || || ||||| Sbjct 3799309 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTTTC 3799368 Query 47912 CATAAAATCAAATGGATTAACTGC 47935 |||||||||||| ||||| |||| Sbjct 3799369 CATAAAATCAAAGGGATTTTCTGC 3799392 >seq17 Length=64289059 Score = 95.1 bits (104), Expect = 2e-14 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | ||| ||| ||| | || ||||| |||||||| | Sbjct 7112116 TTAGAAGTCAGCATCCAAGGTAAACGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 7112057 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 7112056 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 7111997 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 7111996 CATAAAGTCAAATGGATT 7111979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694640422779520