Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq39 154 2e-32 seq21 127 3e-24 seq13 114 2e-20 >seq39 Length=123869142 Score = 154 bits (170), Expect = 2e-32 Identities = 271/391 (69%), Gaps = 3/391 (1%) Strand=Plus/Minus Query 46821 CCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 46880 || ||| || || ||||||| ||||| |||||| || || ||||| |||||||| | | Sbjct 94450234 CCGATCTGCTTTCTTCTTTATACAAGACATTGTCTCAATGGCATTGAAGAGAAATTCCCT 94450175 Query 46881 ttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTT 46940 ||| | | |||||||| | | || | || | || |||||||| || || | ||||| Sbjct 94450174 TTCTTTAGAATCTTTAATAAAAGTGACAATGAGGAGGCTATACATCTCAGAGTTGATGTT 94450115 Query 46941 TTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACA 47000 ||| | | || || ||||| || ||||| ||||| ||||||| || ||| Sbjct 94450114 TTCCACGACAATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCTTGGAT 94450055 Query 47001 AAATCGTTCAGACAAATTCTCATTC-ACTATTCCATCACTAGCAGCAAAAAATGCCAATA 47059 ||| | || ||| || || || ||||| |||||||| || |||| || ||||| | Sbjct 94450054 AAACCACTCCACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGCCAAAA 94449995 Query 47060 CATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCC-AGTCATTGATATCTTTT 47118 ||| ||||||||| | || || | || | ||||| | | | || || || Sbjct 94449994 TATGGGGTATAAAATATCTCTCCTCAGGTTTC-GAGGATTCCCAATGCTGAATGTCCTTG 94449936 Query 47119 GATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCAT 47178 || | ||| || |||||||||||||| || || ||||| ||||| |||||||| | ||| Sbjct 94449935 GAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAA 94449876 Query 47179 ATATCACGATATTGGATCGGAAAAATAACAA 47209 ||| || | || | ||| | | ||| |||| Sbjct 94449875 ATACCATGGTACTCGATAAGGAGAATGACAA 94449845 >seq21 Length=50858623 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| || || ||||||||||| || || || |||||||| ||||| | || Sbjct 26626585 TGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 26626526 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 26626525 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 26626466 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 26626465 TTTCTTACACCAT 26626453 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || |||||||||| || ||||| ||||| || ||||| || |||||||| || ||| Sbjct 26610076 GTACCAGCATTAAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 26610017 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 26610016 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACTCTCATCAAC 26609957 Query 77114 ATATGCTGAGGTCGTTCT 77131 ||||| || |||| |||| Sbjct 26609956 ATATGTTGTGGTCTTTCT 26609939 Score = 105 bits (116), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || ||||| || || || || || || Sbjct 26604883 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCAGGATG 26604824 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 |||||||||||||| | || || |||| || ||| | || || || |||||||| | | Sbjct 26604823 GCATAGTCAGGATGCTTAGTCGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCAGT 26604764 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | |||||| || || | |||| ||||| || |||||||||| Sbjct 26604763 TCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 26604718 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||| ||||| || | ||| | || | || || || || || ||||| || Sbjct 26621657 GAACCTTCATAGGTTTCATATGGCCCATGCTCCTTGGCCAGGTCACAGCTGGCCTCCAAG 26621598 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || || |||||||| ||||| || || | |||||| || || ||||| |||| ||| Sbjct 26621597 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCA 26621538 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 |||||||| | |||||||| |||||||| || || || || ||||| ||||| || Sbjct 26621537 AAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGG 26621478 Query 76130 CTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 26621477 CGATGGCGTTTATTTGA 26621461 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||| | ||||||||| ||||||||||| |||||||| |||||||||||||| ||||| Sbjct 26617189 ATATAGCTTTTCAAATTCCTCTCCCCAAACCTCATCCAATCCAGGACATTCATTTGGACA 26617130 Query 76570 CATCAATGACCACTC 76584 |||||| ||||| || Sbjct 26617129 CATCAAAGACCAGTC 26617115 >seq13 Length=63241923 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | || | Sbjct 3818023 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 3818082 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || ||||||||||| ||||| || ||||||||||| || || | Sbjct 3818083 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 3818142 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 3818143 CCACGACTCTTTCCCC 3818158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712905276629760