Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq7 161 1e-34 seq9 116 5e-21 >seq7 Length=80974532 Score = 161 bits (178), Expect = 1e-34 Identities = 208/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| ||||| | |||| |||||||| || | || | |||| ||| Sbjct 19669833 AATGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATTGAGGCAGTGTTGATGATT 19669892 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || || || ||||| || |||||||| ||||||||||| | || || |||||| Sbjct 19669893 TTAAAGCCTACTTCTCCACCAAAGGTGCTAGGCTTCCAGTAGTCAGGTGAACAGATGGGA 19669952 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || |||| || | ||| ||||||| ||| Sbjct 19669953 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATTTCTACCATGGTCTCACCAAAG 19670012 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||| | ||||| |||||||| ||||||| | | |||||||||| || || | Sbjct 19670013 ATGGCATCTGGACGAGGCTTTTCTACCAAGAGGGCAGGATACAGCTCCATGGCATCAATA 19670072 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || ||||||||| | | ||||| || ||||| |||||||| Sbjct 19670073 TCACCATAAAGGGCCTCCAACCCCGCAGCCATTTCCTTCTCTCCTGT 19670119 Score = 127 bits (140), Expect = 3e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 9648 TTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAA 9707 ||||||||||||| |||| |||||| ||||| || || |||||| ||| ||| | | Sbjct 19672337 TTCTTACCCCATGGCCCAATCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGA 19672396 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 |||| || || || || || ||| |||| || |||||||| | |||||||| ||||||| Sbjct 19672397 AAAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTGGTGCCTTGGGGAT 19672456 Query 9768 CGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCT 9827 | ||| |||| | || || |||||| |||||||||| | | | ||| || |||| Sbjct 19672457 CAGGAATGAACTTTCTTCGCAGAAGAAACTTTTCCACAATCTCTTTTGAATCAGGAAGCT 19672516 Query 9828 TTGTTTTACCTGGTGAACGAGAA 9850 | | || |||| ||| ||||| Sbjct 19672517 CTTTCTTGCCTGAAGAATGAGAA 19672539 >seq9 Length=61074082 Score = 116 bits (128), Expect = 5e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || ||||| ||||| |||||||||||| | || | Sbjct 60196007 TCTTGACCATATTGAAGCCCATCTCACCACCGAATGTGCTCGGCTTCCAGTACTCTGGAG 60196066 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | |||||| || |||||||| |||||||| | || | || | Sbjct 60196067 AACAGATGGGATTCCCTAGGAGGCCCTTAAGGGAGAAGGGAGCCCCAATTTCTATCATAC 60196126 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| || ||| || ||| |||| | | || | ||| | |||| Sbjct 60196127 TCTCTCCAAAGATGGAATTTGGATGGCACTTCTCCAGAAGCAGCCCCGGGTAGAATTCCA 60196186 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | |||||| || || || | ||||| || |||||||| || |||| Sbjct 60196187 AGGCATCAATGTCTCCATACAGCTCCTCCAACTCGGCTGCCATCTCCTTCTCCCCTG 60196243 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || || | ||||||||| | |||||||| |||||||| |||| ||| || || || Sbjct 60203548 CCAATGAGGATGAGTCGGGCCGTCTGGAAGAGTTGCTCATCACCCCAAGTGGGGTGCTCA 60203607 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 ||||| | || ||||| | ||||| || | ||||||| ||||| || | |||| Sbjct 60203608 GCCTTCAGCAGGTCACACACACGATTGTGCTCACGCAGCCAGAGCGTGGCATAGAGCATG 60203667 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 |||||||| | ||| ||||| |||| || || || |||| Sbjct 60203668 AGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACGGCCA 60203707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716847515582720