Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq8 502 2e-137 seq5 297 1e-75 seq23 168 5e-37 seq7 123 2e-23 >seq8 Length=117296131 Score = 502 bits (556), Expect = 2e-137 Identities = 443/553 (80%), Gaps = 0/553 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 23960345 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 23960404 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 || |||||| |||||||||| | |||||| ||||| || | ||||| |||||| | Sbjct 23960405 CCAAAGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCAAAATCAATTTCTGGGA 23960464 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| |||| |||||| |||||||||||||| |||||||| ||| |||||| || || Sbjct 23960465 AAAACACATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 23960524 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | |||| ||||| ||||| |||||||| ||||| | |||||| ||||||||||||| Sbjct 23960525 GCTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 23960584 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267 |||||| ||||||||| | ||| ||||||| ||| |||||||| ||||| || || | || Sbjct 23960585 TATTTGTTAATTCTGGATCTTCAGTAAGTTCTAAGGCATCATCCAAACTTTTGGCAAGAA 23960644 Query 4268 AATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTT 4327 ||||||||| | |||| | ||||| ||||| | |||||||| | |||||||||| | | Sbjct 23960645 AATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCT 23960704 Query 4328 TTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAAT 4387 ||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| |||| Sbjct 23960705 TTAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 23960764 Query 4388 TCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCA 4447 |||||||| || | | ||||| | |||||||||||||||||| || || |||||| Sbjct 23960765 TCTGTTTACCTTCTTCTGAAGAGATTATAGTCATTCTTTGGAAATACTTGAATTCATTCC 23960824 Query 4448 TAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAA 4507 | ||| |||||| |||| ||| || | ||||| ||||||||||| || | |||| | Sbjct 23960825 TGAGTGGTGGCCAGGGCAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACACAGTGA 23960884 Query 4508 CAATGCAGTTTAG 4520 ||||||||||| Sbjct 23960885 TGATGCAGTTTAG 23960897 >seq5 Length=114008975 Score = 297 bits (328), Expect = 1e-75 Identities = 325/431 (75%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || | ||||||||||||||||||||| |||||| || || | ||||| ||||| Sbjct 38988512 TTTTCTTTTACTTCAAATTTGTACTTAATGACTTTCTCCTCCTGGA---TAGAAGGAACA 38988568 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098 | |||||||||| | |||||| || || || | |||| |||| ||||||| | ||| Sbjct 38988569 CCTGGATATTCTGGGAGAAGTTTATAATTTTCCAAATCATTTTCTAGAAAAAATGCATCA 38988628 Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158 | |||||| |||||||| || | | |||||| | | |||||| || ||| | ||| Sbjct 38988629 CTTTCAAATTCTTGCATAATTATTGCCACAAATAATCTAAGATGGCCTGGCTTGTTCAAG 38988688 Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218 ||||| ||| | |||||| | ||| | ||| || ||||| |||| |||||||| |||| Sbjct 38988689 GCTTCCTTA---ATAGAACTGCTTCCTACTATTCAAACCATATCTAGTTTATTTGTTAAT 38988745 Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278 |||| || || |||||| |||||||||||| | ||| || || | ||||||||||| Sbjct 38988746 GCTGGTTGCACGATAAGTTCTAAAGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCC 38988805 Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338 || ||| | ||||| ||||| | |||||| | ||||||||| ||||||||| || Sbjct 38988806 TGGGGAGGTTCCTTGAGTTCTCTATTGAGAATTATATTAATTCTTTCTTTTAAAGATCGA 38988865 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||||| || ||| | |||||| ||||| ||||||| ||||| ||||||||||||||| Sbjct 38988866 TTCTTTTCTGGAGTGTTGAACCACGTCTTCCTACCCATTATCACCAAATTCTGTTTATCT 38988925 Query 4399 GGTACAGAAGA 4409 ||| || || Sbjct 38988926 TCTACTGACGA 38988936 Score = 224 bits (248), Expect = 7e-54 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||| ||||||||||||||||||| | ||| || || || |||| Sbjct 48487788 ATTAATTGTTCTTTTCATATGCTTCAAATTTGTACTTAATGCCTTTTTCATCCTGGACAT 48487847 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| |||||| |||||||||| | |||||| || || || | ||||| |||||||| Sbjct 48487848 CAGAAGGAACACCTGGATATTCTGGGAGAAGTTTATACTTTTCCAAATCAATTTCTGGAA 48487907 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || |||| ||||| || ||||||||||| |||||||| ||| |||||| || || Sbjct 48487908 AAAATGTATCACTTTCAAGTTCCTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 48487967 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || ||||| || | |||||||| ||||| | |||||| ||||||||||||| Sbjct 48487968 GCTTGTTTATGGCTTCCTTGCAGACAGAACTTCCTCCCACTATCCAAACCATGTCTACTT 48488027 Query 4208 TATT 4211 |||| Sbjct 48488028 TATT 48488031 >seq23 Length=51751091 Score = 168 bits (186), Expect = 5e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | |||| | | |||||||| || || || |||||||| || | ||| Sbjct 23908467 AGAAAGCTCTTAAGCCACATGGCGGACAATGGGGGTGACACAGGTGCAGCCCACGGCCAC 23908408 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | ||| | | | || | || || Sbjct 23908407 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGAAGGACCAG 23908348 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| | Sbjct 23908347 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 23908288 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || || Sbjct 23908287 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 23908228 Query 27167 ATTGCG 27172 |||||| Sbjct 23908227 ATTGCG 23908222 >seq7 Length=111973123 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||| ||||||||| Sbjct 82806387 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 82806446 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 82806447 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 82806506 Query 4285 AGCTCC 4290 | ||| Sbjct 82806507 GGTTCC 82806512 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 82810457 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 82810516 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 82810517 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 82810565 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| |||| |||||| |||||||| Sbjct 82804008 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACACATCACTTTCAAATTCTTGCAT 82804067 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| |||||| || ||| | |||| ||||| || | | ||| Sbjct 82804068 GATCCTTGTCACAAATAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 82804127 Query 4176 AC 4177 || Sbjct 82804128 AC 82804129 Score = 86.0 bits (94), Expect = 5e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 82800195 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 82800254 Query 4028 TAGAAAGAACACTTGGATAT 4047 ||| |||||| ||||||| Sbjct 82800255 CCGAAGGAACACCTGGATAT 82800274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360857162769998