Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq19 86.0 5e-12 seq11 82.4 7e-11 >seq19 Length=68041221 Score = 86.0 bits (94), Expect = 5e-12 Identities = 168/247 (68%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 28924 CACAGCAACCGTTGTCATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACAT 28983 ||||| ||| || | |||| | | |||| || ||||||||||| ||| | || || Sbjct 35860388 CACAGTAACGTTTTCCTTTTAAACCTTATAG-GTCAAAATGCAAATCTTCGTGAAGACCC 35860330 Query 28984 TGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTTAAGC 29043 |||| ||||| ||||| ||| || ||| ||| || || | | || | ||| Sbjct 35860329 TGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGG 35860270 Query 29044 AAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCA 29103 || || ||||| ||||| | ||| || || || || || |||||||| |||| Sbjct 35860269 CCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCA 35860210 Query 29104 AACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 29163 | || ||||||||| | ||| | | |||||||| || |||||||| || || || | Sbjct 35860209 AGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAGGAGTCGACCCTGC 35860150 Query 29164 ACATGGT 29170 || |||| Sbjct 35860149 ACCTGGT 35860143 >seq11 Length=102031526 Score = 82.4 bits (90), Expect = 7e-11 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||||| || || || |||||||| ||| |||| ||||||||||||||| Sbjct 42483500 GATAAGGAAGGTGTTCCTCCTGACCAGCAAAGACTGATCGTTGCTGGCAAACAACTGGAA 42483441 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 || | | || || || | ||||| ||||| ||||| || |||||||| Sbjct 42483440 GA-TGGATGTCTTTGACCAACTACAACATTCAAAAGGAGTCCACTCTTCA 42483392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427868789563190