Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq22 277 2e-69 seq9 118 1e-21 seq12 87.8 2e-12 >seq22 Length=61117494 Score = 277 bits (306), Expect = 2e-69 Identities = 264/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| || ||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 49603585 AGCAGGGTTTCAATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 49603526 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 49603525 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 49603466 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||| | |||| || |||||| ||| ||| | | |||||| || Sbjct 49603465 CACACCGGGGACCACGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTT 49603406 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| | ||| || |||||||||||||||||||| ||| | | || |||||| Sbjct 49603405 GGCGTGGGCAGAGTCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTGACC 49603346 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||| ||||||||||| || || |||||||| || || || ||||||| |||| Sbjct 49603345 TCGCACTTTTCGAAGAGCATGAAATTGGGCTCGAACCCACCGCCTGGTCGGACGTACTTC 49603286 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| ||| |||||||| Sbjct 49603285 AGGCAATTCAGGATCTCCTCGTTCTTGGCATTTTCCTG 49603248 >seq9 Length=91317560 Score = 118 bits (130), Expect = 1e-21 Identities = 205/288 (71%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| ||| Sbjct 29212923 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCGCGCCTGC 29212981 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 29212982 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 29213041 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| || | | |||| |||||| Sbjct 29213042 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGTATCAAGCTCATCCGCCACTAT 29213100 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| |||| |||| ||| || || || || |||| ||| ||||| ||| Sbjct 29213101 GTGCAGCTGCTCTACCCACGGGCTAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 29213159 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || |||||||||||||||||||| | |||||| || |||||| Sbjct 29213160 CAAACTCGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 29213205 >seq12 Length=84961321 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111 |||| ||| |||| || | |||||||| | | ||||| | | |||| ||||||||| Sbjct 15408338 GGGGAAGCGGGGCTTCTGTATCGGGCTCAATGTCCAGGATTAGAAAGCGACGGCTGTACC 15408397 Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTT-CTCGAAGTTCCAGGCCACGTCG 83170 |||||| |||| ||||| | ||||||| || ||| || |||| || ||| | ||| Sbjct 15408398 TGCGCAAGGGCCCACCGTCTGGGCCCACCAGGAGCTTCCTGGAAGCTCTGGGCGAAGTCC 15408457 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG 83217 |||||||||| || |||||| |||| | ||| || || |||| Sbjct 15408458 CTGCGGCACAC-AGACACCAGGGGATGAACCTGGGATCCTTCCCGAG 15408503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608115723799920