Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq11 82.4 6e-11 >seq11 Length=102031526 Score = 82.4 bits (90), Expect = 6e-11 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||||| || || || |||||||| ||| |||| ||||||||| ||||| Sbjct 42483500 GATAAGGAAGGTGTTCCTCCTGACCAGCAAAGACTGATCGTTGCTGGCAAACAACTGGAA 42483441 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| | || || || | ||||| ||||||||||| || |||||||| Sbjct 42483440 GATGG-ATGTCTTTGACCAACTACAACATTCAAAAGGAGTCCACTCTTCA 42483392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410348720566172