Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq19 109 6e-19 seq23 100 3e-16 seq1931 98.7 1e-15 seq17 98.7 1e-15 seq3 98.7 1e-15 seq22 95.1 1e-14 seq15 95.1 1e-14 seq10 95.1 1e-14 seq542 91.5 2e-13 seq5 89.7 6e-13 seq10643 87.8 2e-12 seq4 87.8 2e-12 seq9 86.0 7e-12 seq2 86.0 7e-12 >seq19 Length=68041221 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| ||||| || | || || |||||||| || || || Sbjct 35860160 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 35860219 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||| | || | || ||||| ||| ||| || || | | Sbjct 35860220 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 35860279 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 35860280 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 35860339 Query 43172 AAAGATTTGCATTTTTAC 43189 |||||||||||||| || Sbjct 35860340 GAAGATTTGCATTTTGAC 35860357 Score = 105 bits (116), Expect = 8e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 30155617 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 30155676 Query 60124 TATACTACCGAGGATTGA 60141 ||||||| |||||| ||| Sbjct 30155677 TATACTAACGAGGAGTGA 30155694 >seq23 Length=51751091 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 30269850 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 30269791 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 30269790 ATACTAACGAGGA 30269778 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 30324794 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30324853 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 30324854 TACTAACGAGGA 30324865 >seq1931 Length=7756601 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7115042 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7115101 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7115102 TACTAACGAGGA 7115113 >seq17 Length=72096382 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 46135342 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 46135283 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 46135282 TACTAACGAGGA 46135271 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 46138223 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 46138164 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 46138163 TACTAACGAGGA 46138152 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||| |||| ||| |||||| || || ||||| |||| | Sbjct 46150787 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 46150728 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || ||||| || || || || || | | ||||||||| | || Sbjct 46150727 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 46150668 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || || ||| || |||| || | | ||||| || | ||||| Sbjct 46150667 ATGCCTTCTTTTTCTTGGATCTTCACCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 46150608 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || || || |||||||||||||| |||||| Sbjct 46150607 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 46150560 >seq3 Length=114358107 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7874083 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7874142 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7874143 TACTAACGAGGA 7874154 >seq22 Length=61117494 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2962469 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2962410 Query 60126 TACTACCGAGGA 60137 ||| | |||||| Sbjct 2962409 TACAAACGAGGA 2962398 >seq15 Length=79227551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | ||||||| ||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5073432 CTCCCTGTCAGGGAAACGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5073491 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 5073492 TACTAACGAGGA 5073503 >seq10 Length=107483571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | ||||||| ||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8126878 CTCCCTGTCAGGGAAACGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8126819 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 8126818 TACTAACGAGGA 8126807 >seq542 Length=2881201 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| ||| || || |||||||| || | |||||| || | || || |||| Sbjct 35926 TGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTCCAGCTCT 35985 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || | ||| || || ||||||||||| | || | || ||||| || | || ||| Sbjct 35986 TTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGAATGCCCTCCTCGT-CTTGGATTTG 36044 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 ||||| || | | ||||| || | || || || | || ||||| |||||| | Sbjct 36045 GCTTTGACACTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCCATC 36104 Query 43161 AGCGTCTTTACAAAGATTTGCATTTTTACGCC 43192 || ||||| |||||||| ||||| | | |||| Sbjct 36105 AGGGTCTTCACAAAGATCTGCATCTCTGCGCC 36136 >seq5 Length=114008975 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 59239117 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 59239058 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 59239057 TACTAACGAGGA 59239046 >seq10643 Length=2094380 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| | |||||||||||||||||||||||| | ||||||| || ||||||||| Sbjct 1620906 TTGTCTCCCCATCAGGGAATCGAACCCTGGTCTCCCACCTGACAGGTGGGGATACTCACC 1620965 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| ||||| Sbjct 1620966 ACTATACTAAAGAGGA 1620981 >seq4 Length=118086705 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||| |||||| ||||||||||||||||||||||| ||||||| |||||||||| |||| Sbjct 27734586 GGGACTCGAACACTGGTCTCCCGCGTGACAGGCGGGGATACTCAGCACTATACTAACGAG 27734527 Query 60136 GAT 60138 ||| Sbjct 27734526 GAT 27734524 >seq9 Length=91317560 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||| |||||||||||||| | |||||||||||| ||||||||||||| Sbjct 3806883 CTCCCCGTTAGGGAATTGAACCCTGGTCTCCTGTGTGACAGGCGGAGATACTCACCACTA 3806942 Query 60126 TACTACCGAG 60135 |||| |||| Sbjct 3806943 CACTAACGAG 3806952 >seq2 Length=128023632 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||| |||||||||||||| | |||||||||||| ||||||||||||| Sbjct 3417420 CTCCCCGTTAGGGAATTGAACCCTGGTCTCCTGTGTGACAGGCGGAGATACTCACCACTA 3417479 Query 60126 TACTACCGAG 60135 |||| |||| Sbjct 3417480 CACTAACGAG 3417489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571177893355440