Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq26 89.7 8e-13 seq18 89.7 8e-13 seq11 84.2 3e-11 >seq26 Length=53792517 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 |||||||| | |||||| || || | ||| | ||| || || ||| || || || || || Sbjct 43958350 GTTCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTC 43958292 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || | ||| | | ||| || | ||| || ||| |||| |||| ||||||||| || || Sbjct 43958291 AGACAAAGTACATCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGG 43958232 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| || Sbjct 43958231 AGGAATTCCTTCCTTATCCTG 43958211 >seq18 Length=67558079 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 35524284 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 35524342 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| ||||||||| || ||||| Sbjct 35524343 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 35524402 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 35524403 AATTCCTTCCTTATCCTG 35524420 >seq11 Length=102031526 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 146122 ATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTT 146181 ||| || ||||| || |||||||| |||| |||||||||||| ||||||||||||| ||| Sbjct 16973570 ATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTTTT 16973511 Query 146182 ATCTTG 146187 |||||| Sbjct 16973510 ATCTTG 16973505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742694598428160