Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq24 89.7 4e-13 >seq24 Length=62255461 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| | ||||| | || ||||| || || ||||| || ||||| | || Sbjct 34164141 AGATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAA 34164200 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| || || |||| ||||| || | || ||||| |||||||| || || Sbjct 34164201 TGGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTT 34164260 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||||||||| || || || ||||| || || ||||| ||||| Sbjct 34164261 CAATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 34164302 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 20285 CAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGA 20344 || |||||| || ||||||||||||||| | ||||| || ||| | ||| ||||| | Sbjct 34163323 CAGATTATTCAGGTCAAGGAGTAGATCAACTGCAAAAAGTGATTGACACAATCAAAACCA 34163382 Query 20345 ACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAG 20389 |||| |||||||||||||| || | || || ||||| | |||| Sbjct 34163383 ACCCTAACGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAG 34163427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398748587307610