Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15 116 3e-21 seq11 95.1 1e-14 seq18 87.8 2e-12 seq26 84.2 2e-11 >seq15 Length=79227551 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| || || || ||||| || || || || Sbjct 47753296 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 47753355 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 47753356 CCCAAGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 47753415 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 47753416 CCTGTCTCTGTCTGAGACTCAATGATGGC 47753444 >seq11 Length=102031526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||||| || | ||| | || | || | || | Sbjct 42483593 ATGCAGATTTTCGTGAAGACCTTGACAGGGAAGAGCATCTCTCTCAAGGTCAAGCCCTTG 42483534 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | || ||| |||||||| || || || |||||| Sbjct 42483533 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTGTTCCTCCTGACCAG 42483474 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || | ||||||||||| ||||||| | ||| || ||| | | || ||| Sbjct 42483473 CAAAGACTGATCGTTGCTGGCAAACAACTGGAAGA-TGGATGTCTTTGACCAACTACAAC 42483415 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGAC 31409 |||||||| || || ||||||||||| || || |||| Sbjct 42483414 ATTCAAAAGGAGTCCACTCTTCATCTTGTGCTGAGAC 42483378 >seq18 Length=67558079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || | || || || ||||| | || || || || Sbjct 35524513 AAGATGCAGATTTTCGTGAAGACCCTAAGGGGGAAGACCATCACTCTTGAGGTCGAGCCC 35524454 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || ||| Sbjct 35524453 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 35524394 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 35524393 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 35524335 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 35524334 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 35524293 >seq26 Length=53792517 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| |||||| | ||||| |||||||| || || | ||| | || || || || || | Sbjct 43958122 TGCAGATTTTCATGAAGACCCTGACAGGGAAGACCACCACTCTTGAGGTCGAGCCCTCGG 43958181 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 | | |||| || || | || ||| |||||||| | || || ||||||| Sbjct 43958182 ATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGC 43958241 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAAC 31372 | | || || || | |||||| || ||||||| | ||| ||| || || || ||| Sbjct 43958242 AAAGACTGATCTTTGTTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACTACAAC 43958300 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || ||||||||||| || | ||||| Sbjct 43958301 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 43958338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445267709984160